Glyma15g11890 - SoyBase

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Report for Sequence Feature Glyma15g11890

Feature Type:	gene_model
Chromosome:	Gm15
Start:	8790151
stop:	8796879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g11890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12000	AT	Annotation by Michelle Graham. TAIR10: Phosphofructokinase family protein \| chr1:4050159-4053727 REVERSE LENGTH=566	SoyBase	E_val: 0	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006085	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA biosynthetic process	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005945	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: 6-phosphofructokinase complex	SoyBase	N/A	ISS
GO:0010318	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 6-phosphofructokinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0047334	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	SoyBase	N/A	ISS
KOG2440	KOG	Pyrophosphate-dependent phosphofructo-1-kinase	JGI		ISS
PTHR13697	Panther	PHOSPHOFRUCTOKINASE	JGI		ISS
PF00365	PFAM	Phosphofructokinase	JGI		ISS
UniRef100_I1MFL2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFL2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HTG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyrophosphate-dependent phosphofructokinase PfpB n=1 Tax=Medicago truncatula RepID=Q2HTG9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g11890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g11890 not represented in the dataset	Glyma15g11890 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g11890

Paralog	Evidence	Comments
Glyma09g01050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g11890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g112300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g11890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g11890

Limit To All Plant Sequences

>Glyma15g11890.1   sequence type=CDS   gene model=Glyma15g11890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCTACTACCACCGTACCTATTGGTACCCTCCCCTCCGGTTCCGTCACCGGACGCTTAGCCTCCGTCTACAGTGAGGTCCAAAAGACGCGCGTGGACCACGCGCTCCCTCTCCCCTCCGTCCTCAAGCATCCCTTCACCATTCTCGACGGTCCTCCAAGCTCCGCCGCCGGAAATCCAGACGAGATCGCGAAGCTGTTTCCGCATTTGTTCGGACAACCTTCCGCGGCATTGGCGCCGAGCGGTGCGGTGCAGACGCAGAAGAAGTTGAAGATTGGCGTGGTTCTGTCCGGAGGCCAGGCTCCCGGAGGTCACAATGTCATTTCTGGAATATTCGATTACCTGCAAGAGCGCGCACCAGGAAGCACGTTGTACGGTTTCAAAGGTGGACCTGCTGGCATTATGAAGTGCAAATACGTTGAACTCACTTCTGAATATATTTATCCTTATAGAAATCAGGGTGGCTTTGACATGATTTGCAGTGGGAGGGACAAGATTGAAACTCCAGAGCAGTTTAAGCAAGCGGAAGAAACAGCTAAGAAGCTAGACTTGGATGGGCTCGTTGTTATTGGTGGTGATGACTCAAACACCAATGCATGCCTCCTTGCTGAGAACTTCAGGAGCAAAAATTTAAAAACAAGTGTAATTGGATGCCCTAAAACCATTGATGGTGATTTAAAATGCAAAGAAGTTCCCACAAGTTTTGGGTTTGATACTGCTTGCAAGATATATTCTGAAATGATTGGAAATGTTATGATAGATGCCCGATCAACTGGAAAATATTACCATTTTGTGCGGCTTATGGGGCGTGCAGCTTCACACATTACGCTGGAATGTGCCTTACAAACTCATCCAAACATTACTATTATTGGAGAAGAGGTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGATGTTGTTTGTAAAAGAGCTGAAATTAATTACAATTATGGTGTTATTCTTATCCCCGAAGGTCTAATTGATTTCATACCTGAGGTCCAGCATCTCATTGCAGAACTAAATGAAATTCTTGCCCATGATACCGTGGATGAGGGTGGGTTATGGAAGAAGAAACTCACTGATCAATCGTTGAAGCTTTTTGACTTTTTACCTCAAGCAATTCAAGAGCAATTGATGCTTGAAAGAGATCCACATGGAAATGTTCAGGTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAGTTGGAGAAGAGAAAGCAAGAAGGCAAATACAATGGCGAATTTAAAGGGCAATCCCACTTTTTTGGTTATGAAGGGAGGTGTGGCTTGCCTACTAATTTTGATGCTACTTATTGCTATGCTCTGGGTTATGGTGCTGGAGCCCTCCTTCATAGTGGGAAGACTGGATTAATATCATCAGTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATGGTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAACTTGAAGGGGCACCCTTCAAAAAGTTTGCCTCCTTGCGGGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGGTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTACTCTTGGAGCTTGAAGCACTAGCTTAG

Predicted protein sequences of Glyma15g11890

Limit To All Plant Sequences

>Glyma15g11890.1   sequence type=predicted peptide   gene model=Glyma15g11890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPTTTVPIGTLPSGSVTGRLASVYSEVQKTRVDHALPLPSVLKHPFTILDGPPSSAAGNPDEIAKLFPHLFGQPSAALAPSGAVQTQKKLKIGVVLSGGQAPGGHNVISGIFDYLQERAPGSTLYGFKGGPAGIMKCKYVELTSEYIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTSVIGCPKTIDGDLKCKEVPTSFGFDTACKIYSEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVVCKRAEINYNYGVILIPEGLIDFIPEVQHLIAELNEILAHDTVDEGGLWKKKLTDQSLKLFDFLPQAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQEGKYNGEFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVANLCAPVEEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGAPFKKFASLRDEWALKNCYISPGPIQFSGPGSEVINHTLLLELEALA*

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