SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04210 | AT | Annotation by Michelle Graham. TAIR10: plant UBX domain containing protein 4 | chr4:2030391-2031670 FORWARD LENGTH=303 | SoyBase | E_val: 8.00E-137 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG2086 | KOG | Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion | JGI | ISS | |
| PTHR23333 | Panther | UBX DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PTHR23333:SF6 | Panther | PHOSPHATASE-RELATED | JGI | ISS | |
| PF00789 | PFAM | UBX domain | JGI | ISS | |
| PF08059 | PFAM | SEP domain | JGI | ISS | |
| UniRef100_B9RXF0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NSFL1 cofactor p47, putative n=1 Tax=Ricinus communis RepID=B9RXF0_RICCO | SoyBase | E_val: 8.00E-152 | ISS |
| UniRef100_I1MFL0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFL0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g11860 not represented in the dataset |
Glyma15g11860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g01010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g112000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g11860.1 sequence type=CDS gene model=Glyma15g11860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCACGGGACAACAAGAAGGCGTCGAGCAGCCGAGCCGGCAGAATTCGCACCCTCTCCGATCTGAACCGTCCCTCCGCCGATTCCGACAGCGACTCCGATGGCCCTCAGGAGTACTACACCGGCGGCGAAAAGAGTGGAATGCTTGTCCAGGATCCTTCAAAGGGAAATGATGTGGATGAAATTTTCAATCAAGCTAGGCAACTTGGGGCTGTTGAAAGGCCTCTTGATCAGCTTCAGGAGCCTCCAAGGTCAACTAGCTTTACTGGAACTGGCAGGTTACTCTCGGGGGAAACTACACGATCTACTAATAATCAGCAACCTGAGGCTGTTGTTCATAACATTGTTTTCTGGAGTAATGGTTTCACTGTAAATGATGGACCATTGAGGAGTTTGGACGATCCTGAAAATGCCTCATTTTTAGAGAGCATAAAAAAATCTGAGTGTCCCAAAGAGCTTGAGCCTGAAGATAGGAGGTCATCTGTTAATGTTAATCTCATACGGAGGAATGAGAACTATCGTGAACCCGAAAAGCAGCATGTTGCATTTCAGGGAGTGGGAAGAACTCTTGGAAGCAGCTCTACATCAATGGCTCCTGACCCTCCTGCTGCCTCAACACCTCCCAACACAGCACCAACTCCTTCTGCTGGCCTGGTAGTTGATCAATCATTGCCATCAACCTCAATACAACTCAGGTTGGCTGACGGAACCCGCTTGATATCACATTTTAATTACCACCACACAATCAGCGACATTCGTGCCTTCATTGATGCATCTAGACCTGGGGGTCGGCAGAATTATCAACTTCAGTTGATGGGTTTCCCCCCAAAGATTCTAGCTGATGAAACTCAGACTATAGAGCAGGCAGGACTGGCAAATTCAGTTGTCATACAGAAATTTTAG
>Glyma15g11860.1 sequence type=predicted peptide gene model=Glyma15g11860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASRDNKKASSSRAGRIRTLSDLNRPSADSDSDSDGPQEYYTGGEKSGMLVQDPSKGNDVDEIFNQARQLGAVERPLDQLQEPPRSTSFTGTGRLLSGETTRSTNNQQPEAVVHNIVFWSNGFTVNDGPLRSLDDPENASFLESIKKSECPKELEPEDRRSSVNVNLIRRNENYREPEKQHVAFQGVGRTLGSSSTSMAPDPPAASTPPNTAPTPSAGLVVDQSLPSTSIQLRLADGTRLISHFNYHHTISDIRAFIDASRPGGRQNYQLQLMGFPPKILADETQTIEQAGLANSVVIQKF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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