SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20060 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein L4/L1 family | chr2:8659384-8661227 FORWARD LENGTH=300 | SoyBase | E_val: 2.00E-151 | ISS |
| GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0015934 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG1624 | KOG | Mitochondrial/chloroplast ribosomal protein L4 | JGI | ISS | |
| PTHR10746 | Panther | 50S RIBOSOMAL PROTEIN L4 | JGI | ISS | |
| PTHR10746:SF2 | Panther | gb def: l4p-like ribosomal protein, mitochodrial [schizosaccharomyces pombe] | JGI | ISS | |
| PF00573 | PFAM | Ribosomal protein L4/L1 family | JGI | ISS | |
| UniRef100_B9RXF3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L4, putative n=1 Tax=Ricinus communis RepID=B9RXF3_RICCO | SoyBase | E_val: 1.00E-150 | ISS |
| UniRef100_I1MFK7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFK7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g11830 not represented in the dataset |
Glyma15g11830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g00980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g111700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g11830.2 sequence type=transcript gene model=Glyma15g11830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCTAACCTAAAAGCCCAGAGAGGCCCATTAACCAGAGCCACCCTTTGTAAACGGTAACGAGCTCGGGAGCAGCTTCCATGGAGGCATAGACGGAGACGCAGTCATGAACAGGACAGAGTTCAGATTCTTATTCAGAGCAAAATTTGGGGCAGCAAGGAACTAAATCCTCTATCAGCATTAGTTTACCTCTGCGTTCTGTCTCTGGTGCAATCCAGTATAGATTGTTGGGTCAGTTATGGCAGCGTTGATTTCCAAAAGAATCCTACGTTGTTCTTCTTGGTCATTGCATTCACTAGGACGATGTTACTTTGATTCACCTAGTGCTGGGTTTGCCTCTATTTATAAACCTCGTGATGTATGCAGCAGTTTATCTGGGGAGAGAATGTTGCCTGCAGATCGTTCTTTGGTCAGGTCTATGGTCCGACAGTTTTCTACTTCTATTTTAACTCCTGGAGCTGATGATAGTGCATTTCCATCTGATTTATTGTCCAAAAAGACTCTGGCAACATCTGAGCGTACTATAGGAAATCTAGATGGAGGGCTTTGCCAGGATCTTTTAATTCCAGTTACCAACTTTCATAATGAAGACAAGGGCTATATGGTTTTTCCTGGAGATGTTTTTGATTTACCTATTCGGAAGGACATTATTCATCGTGTTGTTAGGTGGCAGCTTGCAAAACGACAACAGGGGACTCACTCAACAAAAACTATCAGTGAGGTCAGTGGGACTGGGAGAAAGCCTTGGAATCAAAAGGGAACTGGTAGAGCAAGGCATGGTTCATTGCGTGGGCCTCAGTTCAGGGGTGGTGCCACCATGCATGGCCCTAAGCCCCGAAGCCATGCTTTCAAAGTCAATAAGAAGGTTCGGCGTCTAGGGCTGAAGATTGCTTTGTCAGCTCGTGCAGCAGAAGGAAAGCTTCTTGTGTTTGAGGATCTGGAGGTTCCCACACATAAAACCAAGAACATTGTGAATTATTACAATCAAATGGAGGATACCAAGAAACTGCTGCTTGTAGATGGCACTATAGATGAAAAGTTAAAATTATCTACGCAAAATCTACACTATGTTAACGTACTTCCCTCAATTGGCTTGAATGTCTACAGCATTTTGCTGCATGATACACTGGTGATGTCCCGAGCTGCTGTGACCAAAATTGTTGAGCGCATGCATACCCCAATAAATCGTTGAGGCTTTAACTTCTTATTGTGCTTAACTTCATTTACTCAGAAATAGGAACATTTCTGTAACAACATAAAGAGATGCAATGAGAATATCTTTGGTACCAGGTTTCGGTTGTAATTACAAGAGTTAGGCGAGTTATGCCATTTTGCCCATGTTGAAGTTGGAACTTGGGAACTTGATTGTCAAAATTTGGTGTTCATGTGATTATTTTTTATCATGTTTTCCATTGGTTGAATCTCATTTTTCAATTCTTTCACATGCGTAGGATCTGATAAACCTGTACATCATTCCTGACCTAGTGTTCTTCATTCATGATTTTAACCAATATAGTTTGTCTTTGGCTTTCAA
>Glyma15g11830.1 sequence type=CDS gene model=Glyma15g11830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCGTTGATTTCCAAAAGAATCCTACGTTGTTCTTCTTGGTCATTGCATTCACTAGGACGATGTTACTTTGATTCACCTAGTGCTGGGTTTGCCTCTATTTATAAACCTCGTGATGTATGCAGCAGTTTATCTGGGGAGAGAATGTTGCCTGCAGATCGTTCTTTGGTCAGGTCTATGGTCCGACAGTTTTCTACTTCTATTTTAACTCCTGGAGCTGATGATAGTGCATTTCCATCTGATTTATTGTCCAAAAAGACTCTGGCAACATCTGAGCGTACTATAGGGCTTTGCCAGGATCTTTTAATTCCAGTTACCAACTTTCATAATGAAGACAAGGGCTATATGGTTTTTCCTGGAGATGTTTTTGATTTACCTATTCGGAAGGACATTATTCATCGTGTTGTTAGGTGGCAGCTTGCAAAACGACAACAGGGGACTCACTCAACAAAAACTATCAGTGAGGTCAGTGGGACTGGGAGAAAGCCTTGGAATCAAAAGGGAACTGGTAGAGCAAGGCATGGTTCATTGCGTGGGCCTCAGTTCAGGGGTGGTGCCACCATGCATGGCCCTAAGCCCCGAAGCCATGCTTTCAAAGTCAATAAGAAGGTTCGGCGTCTAGGGCTGAAGATTGCTTTGTCAGCTCGTGCAGCAGAAGGAAAGCTTCTTGTGTTTGAGGATCTGGAGGTTCCCACACATAAAACCAAGAACATTGTGAATTATTACAATCAAATGGAGGATACCAAGAAACTGCTGCTTGTAGATGGCACTATAGATGAAAAGTTAAAATTATCTACGCAAAATCTACACTATGTTAACGTACTTCCCTCAATTGGCTTGAATGTCTACAGCATTTTGCTGCATGATACACTGGTGATGTCCCGAGCTGCTGTGACCAAAATTGTTGAGCGCATGCATACCCCAATAAATCGTTGA >Glyma15g11830.2 sequence type=CDS gene model=Glyma15g11830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCGTTGATTTCCAAAAGAATCCTACGTTGTTCTTCTTGGTCATTGCATTCACTAGGACGATGTTACTTTGATTCACCTAGTGCTGGGTTTGCCTCTATTTATAAACCTCGTGATGTATGCAGCAGTTTATCTGGGGAGAGAATGTTGCCTGCAGATCGTTCTTTGGTCAGGTCTATGGTCCGACAGTTTTCTACTTCTATTTTAACTCCTGGAGCTGATGATAGTGCATTTCCATCTGATTTATTGTCCAAAAAGACTCTGGCAACATCTGAGCGTACTATAGGAAATCTAGATGGAGGGCTTTGCCAGGATCTTTTAATTCCAGTTACCAACTTTCATAATGAAGACAAGGGCTATATGGTTTTTCCTGGAGATGTTTTTGATTTACCTATTCGGAAGGACATTATTCATCGTGTTGTTAGGTGGCAGCTTGCAAAACGACAACAGGGGACTCACTCAACAAAAACTATCAGTGAGGTCAGTGGGACTGGGAGAAAGCCTTGGAATCAAAAGGGAACTGGTAGAGCAAGGCATGGTTCATTGCGTGGGCCTCAGTTCAGGGGTGGTGCCACCATGCATGGCCCTAAGCCCCGAAGCCATGCTTTCAAAGTCAATAAGAAGGTTCGGCGTCTAGGGCTGAAGATTGCTTTGTCAGCTCGTGCAGCAGAAGGAAAGCTTCTTGTGTTTGAGGATCTGGAGGTTCCCACACATAAAACCAAGAACATTGTGAATTATTACAATCAAATGGAGGATACCAAGAAACTGCTGCTTGTAGATGGCACTATAGATGAAAAGTTAAAATTATCTACGCAAAATCTACACTATGTTAACGTACTTCCCTCAATTGGCTTGAATGTCTACAGCATTTTGCTGCATGATACACTGGTGATGTCCCGAGCTGCTGTGACCAAAATTGTTGAGCGCATGCATACCCCAATAAATCGTTGA
>Glyma15g11830.1 sequence type=predicted peptide gene model=Glyma15g11830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAALISKRILRCSSWSLHSLGRCYFDSPSAGFASIYKPRDVCSSLSGERMLPADRSLVRSMVRQFSTSILTPGADDSAFPSDLLSKKTLATSERTIGLCQDLLIPVTNFHNEDKGYMVFPGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRGPQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALSARAAEGKLLVFEDLEVPTHKTKNIVNYYNQMEDTKKLLLVDGTIDEKLKLSTQNLHYVNVLPSIGLNVYSILLHDTLVMSRAAVTKIVERMHTPINR* >Glyma15g11830.2 sequence type=predicted peptide gene model=Glyma15g11830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAALISKRILRCSSWSLHSLGRCYFDSPSAGFASIYKPRDVCSSLSGERMLPADRSLVRSMVRQFSTSILTPGADDSAFPSDLLSKKTLATSERTIGNLDGGLCQDLLIPVTNFHNEDKGYMVFPGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRGPQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALSARAAEGKLLVFEDLEVPTHKTKNIVNYYNQMEDTKKLLLVDGTIDEKLKLSTQNLHYVNVLPSIGLNVYSILLHDTLVMSRAAVTKIVERMHTPINR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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