Glyma15g11810 - SoyBase

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Report for Sequence Feature Glyma15g11810

Feature Type:	gene_model
Chromosome:	Gm15
Start:	8685899
stop:	8693476
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g11810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04320	AT	Annotation by Michelle Graham. TAIR10: malonyl-CoA decarboxylase family protein \| chr4:2113565-2116525 FORWARD LENGTH=518	SoyBase	E_val: 0	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0050080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: malonyl-CoA decarboxylase activity	SoyBase	N/A	ISS
KOG3018	KOG	Malonyl-CoA decarboxylase	JGI		ISS
PTHR14153	Panther	MALONYL-COA DECARBOXYLASE	JGI		ISS
PF05292	PFAM	Malonyl-CoA decarboxylase (MCD)	JGI		ISS
UniRef100_B9RXF9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Malonyl-CoA decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RXF9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BFFF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BFFF related cluster n=1 Tax=unknown RepID=UPI000233BFFF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g11810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g11810

Paralog	Evidence	Comments
Glyma09g00960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g11810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g111500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g11810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g11810

Limit To All Plant Sequences

>Glyma15g11810.2   sequence type=transcript   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCGCTCGCTCGGACCTCGGAATAAGAACATGGAAACATAAATAGTGGAGGTTGTTGCCAAACAACGATGTAACGCACGATCCAAAAGCAGAAAGCAAAGTTGTTTGACTGATACCAGTTTATTGATTTTGATATCCGAACACACATTCTTTCAGCAAATAAGTACGGAAATATATATGTAAAAAAATGAACAAAAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAAGCCCAACGATCGTACAAGCCTTTCTCTCTCTCCTATTCCTCTAACAAACGCGACGAGTCAAATGCAGCAGCAGAATTCCCGCCAAAACGGATCGCCAGGTGATGGAAATTCAGCGCCAAATGACTCCGGCAACTCCGAGAGAGAGTTTAAGCGTGTCCGCGCTTCAATGCACTCTGCCATATCAATGAGCAAAACAGAAGTTCTAGATGACGTGCTTAATAACTTCTCGGAGGGTTATTTAAACCTTTCTCATGAAAACCGTCGCAAGTTGCTCCTTGTCCTTGCTAGAGAATATGATCTCAATAGGTCACAAGTGCGTGAACTGATAAAGCAGTACCTTGGACTTGAACATCCTGCTGACAAAGCTCAAGTTAGTGGCTCTGAAGACGAAGGTTTGTTTTCTTCTTTCTATCGCATTGAGAGGAATTTGAGACATGCCCTCCAGCCGGTTTATGAAGTTCTCTTTGAGCGTCTCAACACTCATCCTGGAGGGTTGAGGACCTTATCCATTCTTCGAGAAGATATCCTATCTATTCTTGCAGAGGAGAATATTGCATCGCTGAGAGCATTGGATTCTTATTTAATGGAAAAATTTATTACATGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAGATTACATGGGATGATCCTGCTTCTTTGCTGGAGAAAATTGTTGCTTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGACTGGGAATTGGCCGTCGTTGTTTTGGATATTTACATCCCGCTATTCCTGGTGAACCCCTAATTTTCATTGAAGTTGCACTACTGAAGGATATTGCTCAGACTATACAGGAAGTTTTGTGGGATAATCCTCCTATACCTGAAAGTGAGGCAACATGTGCCTTGTTCTACTCCATATCATCAACTCAGCCTGGCTTAGCGGGGATCAACTTGGGAAAATTTCTCATCAAACGGGTTGTAACACAGGTGAAAAGAGAGATGCCACATATTTCTACCTTTGCAACCCTCAGTCCCATCCCGGGATTCATTTCATGGCTTTTATCCAAGTTAGCATCTCAAAGACTGCTTGCTGAGGGAGATAATTTGTCACAACCACAAGCAGAGGGATCCAGTTCCACTTTCTATGAGAATATACTTAAACCCGAGGAGGAAGAAGCACTTATGAGTTTACCTAAGGATATCGCTGCAGGAGAAAATGGAATGGATGTGATGTTCAACTTGCTTACTTCTACATCCTATAAGTGGATCCATTCACCAGAACTTCTGTCAGCATTAAAATCCCCTTTGATGCGTTTATGTGCCAGGTACCTTCTGCAAGAGAAGAAAAGAGGAAAGGCTTTGGACTCTGTAGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAACTGGATGGCAGATCGTTCAGATAAAGGTCTTTCTCAAAGTGGAGGGATCATGGTGAACTACGTGTATAGGTAATCTGTAATTGTCCTCTGAATGTTGTTCTGTTCATACCAAAGTATATTCACAGTTATATTTATGGTGTCAATTTACTCTGTGCCCTTTTGGTCGTTCAGACAAATCTTATTTGCTTAGATGAAGAGTTCCTCTTACCATTTTGGTTCTGGTAGTGAAGTTAGGAAGTCTTACCAATGAAAGGAGCAATAGCTGTACTTGTCATTTCATGCTTTTGTGGTTTACTTGTTATTAATATCTGTATGAATGGACCAGATCAATTTTAAATTTCTCTTCAGTTGATCAAATTTGAAGTATATGCTGCTGATGACACCTAATTACAGGTTGGATCACATAGAAGAATACGCCCAATCATACTTCAACAATGGTGAAATTCATACCTCAAGTGATCTCCATCGCTGGGTTGATGCAACAGATACTGCTTAGTGTCAATTCAAATCTGATAGAAGATAAACCTCAACGTGTTTTCAAAAATATCATATGTGCATGTGGTTTGGAAACAAAGCTCCTTGGCAGCGGACAACCTTGTTACTACTAAGCCCTGCCTTTCTTTGTCTCGACCTCTTTGCTATCACTTGCAGCCATAGAGTGATAAGTGATTGTGAAGTCTGCTTGGTTGGATCGTAATGGAAGGTTTAGTCATAACAATAGGAGTACAGGACAAATGCATCCAAGTCTAAAACAGAGGAAGCATATATCTTTAATTGTTGATGATTTCTGTCCATAGAACAGAAAGCAACTGATTGTGTCACTATCCAAGAATGCCCTATAAATAGGAGGTGCATAGGAGGAAGGTTATAATCAATAGTCCATGCTTGGTAAACCTTAAGCTGTACAATGTAATGTAATATTTGTACTTACAAGACTGACAACAAACACTATCTTATTCTTAGTGAAGAAGGTGCTACTGCTTCTGAAACTGTAAATTATCAAATAGGAAATTGTTCCTTGAACATTGAGGATTGAAGGTAATGCTTGTTGCTTGTTTCATCGTTGGACAATGTTTTCACTTTCAGGTGTAAAGGAAAATTGATTACGCACAAATTGGTCAAAGCTGTCTTCAAAGCCTTGAAACAGCACCACTATAATTCTGGTGCTCCAAGTATCCCAAAAATATCATGGAGGGCATAACAATATATTCTGTTCATCATCAATTTGTAACAAGAACTTGTCCCAACCATTTTATGATCTAACTGTTTTTTTTTTAATCATAACCATGTTAATACTGGAGTATAAAATTGGTCGAAAACCATGTAGACAAGTTCTTTCCTGTACATATAAGTAAGTACATTGCCCTAGCTCCTGTTCGATCAGAGGGAATGAAGGACTATTCACTTCTCGGTTTCAACATGACTGGTTTCTAAGACATATTCCGTCATGAGCCTCGTGTTAGATTCAGTGACCATCTACAAG

Coding sequences of Glyma15g11810

Limit To All Plant Sequences

>Glyma15g11810.1   sequence type=CDS   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAAAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAAGCCCAACGATCGTACAAGCCTTTCTCTCTCTCCTATTCCTCTAACAAACGCGACGAGTCAAATGCAGCAGCAGAATTCCCGCCAAAACGGATCGCCAGGTGATGGAAATTCAGCGCCAAATGACTCCGGCAACTCCGAGAGAGAGTTTAAGCGTGTCCGCGCTTCAATGCACTCTGCCATATCAATGAGCAAAACAGAAGTTCTAGATGACGTGCTTAATAACTTCTCGGAGGGTTATTTAAACCTTTCTCATGAAAACCGTCGCAAGTTGCTCCTTGTCCTTGCTAGAGAATATGATCTCAATAGGTCACAAGTGCGTGAACTGATAAAGCAGTACCTTGGACTTGAACATCCTGCTGACAAAGCTCAAGTTAGTGGCTCTGAAGACGAAGGTTTGTTTTCTTCTTTCTATCGCATTGAGAGGAATTTGAGACATGCCCTCCAGCCGGTTTATGAAGTTCTCTTTGAGCGTCTCAACACTCATCCTGGAGGGTTGAGGACCTTATCCATTCTTCGAGAAGATATCCTATCTATTCTTGCAGAGGAGAATATTGCATCGCTGAGAGCATTGGATTCTTATTTAATGGAAAAATTTATTACATGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAGATTACATGGGATGATCCTGCTTCTTTGCTGGAGAAAATTGTTGCTTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGACTGGGAATTGGCCGTCGTTGTTTTGGATATTTACATCCCGCTATTCCTGGTGAACCCCTAATTTTCATTGAAGTTGCACTACTGAAGGATATTGCTCAGACTATACAGGAAGTTTTGTGGGATAATCCTCCTATACCTGAAAGTGAGGCAACATGTGCCTTGTTCTACTCCATATCATCAACTCAGCCTGGCTTAGCGGGGATCAACTTGGGAAAATTTCTCATCAAACGGGTTGTAACACAGGTGAAAAGAGAGATGCCACATATTTCTACCTTTGCAACCCTCAGTCCCATCCCGGGATTCATTTCATGGCTTTTATCCAAGTTAGCATCTCAAAGACTGCTTGCTGAGGGAGATAATTTGTCACAACCACAAGCAGAGGGATCCAGTTCCACTTTCTATGAGAATATACTTAAACCCGAGGAGGAAGAAGCACTTATGAGTTTACCTAAGGATATCGCTGCAGGAGAAAATGGAATGGATGTGATGTTCAACTTGCTTACTTCTACATCCTATAAGTGGATCCATTCACCAGAACTTCTGTCAGCATTAAAATCCCCTTTGATGCGTTTATGTGCCAGGTACCTTCTGCAAGAGAAGAAAAGAGGAAAGGCTTTGGACTCTGTAGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAACTGGATGGCAGATCGTTCAGATAAAGGTCTTTCTCAAAGTGGAGGGATCATGGTGAACTACGTGTATAGGTTGGATCACATAGAAGAATACGCCCAATCATACTTCAACAATGGTGAAATTCATACCTCAAGTGATCTCCATCGCTGGGTTGATGCAACAGATACTGCTTAG

>Glyma15g11810.2   sequence type=CDS   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAAAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAAGCCCAACGATCGTACAAGCCTTTCTCTCTCTCCTATTCCTCTAACAAACGCGACGAGTCAAATGCAGCAGCAGAATTCCCGCCAAAACGGATCGCCAGGTGATGGAAATTCAGCGCCAAATGACTCCGGCAACTCCGAGAGAGAGTTTAAGCGTGTCCGCGCTTCAATGCACTCTGCCATATCAATGAGCAAAACAGAAGTTCTAGATGACGTGCTTAATAACTTCTCGGAGGGTTATTTAAACCTTTCTCATGAAAACCGTCGCAAGTTGCTCCTTGTCCTTGCTAGAGAATATGATCTCAATAGGTCACAAGTGCGTGAACTGATAAAGCAGTACCTTGGACTTGAACATCCTGCTGACAAAGCTCAAGTTAGTGGCTCTGAAGACGAAGGTTTGTTTTCTTCTTTCTATCGCATTGAGAGGAATTTGAGACATGCCCTCCAGCCGGTTTATGAAGTTCTCTTTGAGCGTCTCAACACTCATCCTGGAGGGTTGAGGACCTTATCCATTCTTCGAGAAGATATCCTATCTATTCTTGCAGAGGAGAATATTGCATCGCTGAGAGCATTGGATTCTTATTTAATGGAAAAATTTATTACATGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAGATTACATGGGATGATCCTGCTTCTTTGCTGGAGAAAATTGTTGCTTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGACTGGGAATTGGCCGTCGTTGTTTTGGATATTTACATCCCGCTATTCCTGGTGAACCCCTAATTTTCATTGAAGTTGCACTACTGAAGGATATTGCTCAGACTATACAGGAAGTTTTGTGGGATAATCCTCCTATACCTGAAAGTGAGGCAACATGTGCCTTGTTCTACTCCATATCATCAACTCAGCCTGGCTTAGCGGGGATCAACTTGGGAAAATTTCTCATCAAACGGGTTGTAACACAGGTGAAAAGAGAGATGCCACATATTTCTACCTTTGCAACCCTCAGTCCCATCCCGGGATTCATTTCATGGCTTTTATCCAAGTTAGCATCTCAAAGACTGCTTGCTGAGGGAGATAATTTGTCACAACCACAAGCAGAGGGATCCAGTTCCACTTTCTATGAGAATATACTTAAACCCGAGGAGGAAGAAGCACTTATGAGTTTACCTAAGGATATCGCTGCAGGAGAAAATGGAATGGATGTGATGTTCAACTTGCTTACTTCTACATCCTATAAGTGGATCCATTCACCAGAACTTCTGTCAGCATTAAAATCCCCTTTGATGCGTTTATGTGCCAGGTACCTTCTGCAAGAGAAGAAAAGAGGAAAGGCTTTGGACTCTGTAGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAACTGGATGGCAGATCGTTCAGATAAAGGTCTTTCTCAAAGTGGAGGGATCATGGTGAACTACGTGTATAGGTAA

Predicted protein sequences of Glyma15g11810

Limit To All Plant Sequences

>Glyma15g11810.1   sequence type=predicted peptide   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKALSILMRARMKPNDRTSLSLSPIPLTNATSQMQQQNSRQNGSPGDGNSAPNDSGNSEREFKRVRASMHSAISMSKTEVLDDVLNNFSEGYLNLSHENRRKLLLVLAREYDLNRSQVRELIKQYLGLEHPADKAQVSGSEDEGLFSSFYRIERNLRHALQPVYEVLFERLNTHPGGLRTLSILREDILSILAEENIASLRALDSYLMEKFITWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGIGRRCFGYLHPAIPGEPLIFIEVALLKDIAQTIQEVLWDNPPIPESEATCALFYSISSTQPGLAGINLGKFLIKRVVTQVKREMPHISTFATLSPIPGFISWLLSKLASQRLLAEGDNLSQPQAEGSSSTFYENILKPEEEEALMSLPKDIAAGENGMDVMFNLLTSTSYKWIHSPELLSALKSPLMRLCARYLLQEKKRGKALDSVANFHLQNGAMVERINWMADRSDKGLSQSGGIMVNYVYRLDHIEEYAQSYFNNGEIHTSSDLHRWVDATDTA*

>Glyma15g11810.2   sequence type=predicted peptide   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKALSILMRARMKPNDRTSLSLSPIPLTNATSQMQQQNSRQNGSPGDGNSAPNDSGNSEREFKRVRASMHSAISMSKTEVLDDVLNNFSEGYLNLSHENRRKLLLVLAREYDLNRSQVRELIKQYLGLEHPADKAQVSGSEDEGLFSSFYRIERNLRHALQPVYEVLFERLNTHPGGLRTLSILREDILSILAEENIASLRALDSYLMEKFITWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGIGRRCFGYLHPAIPGEPLIFIEVALLKDIAQTIQEVLWDNPPIPESEATCALFYSISSTQPGLAGINLGKFLIKRVVTQVKREMPHISTFATLSPIPGFISWLLSKLASQRLLAEGDNLSQPQAEGSSSTFYENILKPEEEEALMSLPKDIAAGENGMDVMFNLLTSTSYKWIHSPELLSALKSPLMRLCARYLLQEKKRGKALDSVANFHLQNGAMVERINWMADRSDKGLSQSGGIMVNYVYR*

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