Report for Sequence Feature Glyma15g11770
Feature Type: gene_model
Chromosome: Gm15
Start: 8663105
stop: 8667808
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g11770
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G11950 AT
Annotation by Michelle Graham. TAIR10: Transcription factor jumonji (jmjC) domain-containing protein | chr1:4034747-4038310 REVERSE LENGTH=875
SoyBase E_val: 0 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG1356
KOG
Putative transcription factor 5qNCA, contains JmjC domain
JGI ISS
PTHR12549 Panther
JUMONJI DOMAIN CONTAINING PROTEIN-RELATED INCLUDING HAIRLESS
JGI ISS
PTHR12549:SF1 Panther
HAIRLESS PROTEIN
JGI ISS
PF02373 PFAM
JmjC domain
JGI ISS
UniRef100_G7JJA9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Lysine-specific demethylase 3A-B n=1 Tax=Medicago truncatula RepID=G7JJA9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233BFFD UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233BFFD related cluster n=1 Tax=unknown RepID=UPI000233BFFD
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g11770
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma15g11770 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g111200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g11770
Coding sequences of Glyma15g11770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g11770.2 sequence type=CDS gene model=Glyma15g11770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTGTAGTATCAGTGTGTACAGGAAAGTCAAATCATCAGACTGACCATAAGTTGGAGTTCTTAAGGCACTCAAATTCCTTTGGAATTCGAAAGAAACAAAATTATCTATATGCTTATACGAGTCCAAAATCAAGAGAAAAAGACACTATGACCTGTGTAAAGAACAATTTTGAATCTTCAAAGAAGAGAAAGGTTCAAGATACTCACAAACTTGACATTATAAAATCTAAGTCAATGGGGGAAGAAGATATTTTGGTTTGTTCAAAGAGGACTACTGAACTTCCATTTAGGAAAGGACTAGAGGCAAATAAGTGTCTTACTGCATTGAAGAAGAAAAGAATACTTGAAGACGCTATCTTAATTAACAATTTGGAAGATGATAAAGTTTATGTTCCCTCGAAGACATACTCCAGAAGCAAAGCTAGAAAAATGGATGATGTAAAGGATACGGCTTCCAGAAGATGTCATCAGTGCATGAAAAAGGAAAGAGCAGCATATGTACCTTGTACTAAATGTCGGAAAATGTATTGTATGTGGTGCATCAGGAAATGGTATTCCAATTTGTCAATAGAAGATATTGCACAAGAGTGTCCCTTTTGCCAAAAGAATTGCAATTGCAATGTTTGCTTGAGTTCAAGAGGAATGATTAAGACGTCAAACAAGTGCATCAGAGATGATGAAAAGGTTCAGTATCTTCAATACACTATTAACCTGCTCCTTCCGTTTATACAACGAGTTTGTGAAGAACAAAGTCAAGAGCTAGAGATTGAAGCTAAAATACAAGGAAAATCAAGATCTGAAATTGAGATATCACAAATTCCTTGTGAAAATGAACGTATCTATTGTGACCATTGTGCTACTTCATTTACTGACCTTTATCGAAGCTGCCCCAAGTGTTCCATTGAAATCTGCCTTAACTGTTGCAAAGAAATACGCAATGGAAGTATATCACCCCGGTCTGAACTGAAGTTTCAATATGTGAATAGAGGCTATGATTATATGCATGGTGGTGATCCTTTACCAGTGTCTTGTGATTTAAGGACTTCAAAAGGTCATAGAGAGATATTTACCAAATGGAGTGCTAACAGTGATGGAAGTATTAGATGTGCTCCAAAAGAAATGGGGGGCTGTGGTGGCTCTGTGTTGGAGCTGAAGCGCTTGTTTCCAAATGGATGGATATCAGACTTAGAAGCCAAAGCTCGTAACATGCTAAAAACTTATTGCAAAACTGAACAAGCAACTCTTCAGAAAGAAGCAACATCAAGTTGCAATTCTATGATAAGAGCAGCTTTTAGAGATGGCACAAATGATAATAACTTATACTGTCCATTGTCAAGTGACCTCATAAATGAAGGACTGTTTCTCTTCCAAAAACATTGGACTAAAGGTGAACCAATTATAGTTCGTGATGTTCTTAACCAGGGGACAGGTCTGAGTTGGGAGCCAATGGTCACATGGCGAGCACTATGTGAAAATGTGGTTCCAGGGATCAGCTCAAATATGTTAGAAGTGACGGCCATTGATTGCTTGGCTAGTTGCGAGGTAGAAATCAACACTCGTACGTTCTTTAAGGGTTACACACAAGGAAGAACATATAGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGATTGGCCCCCCTCTCATAAGTTTGAAGATCTTTTGCCTCGCCATTATGATGAATTTATCCGTTGCTTGCCATTTCAAGAGTATAGTGACCCTCGAGCTGGAATCCTCAACCTTGCTGTAAAGTTGCCACCCCATGTCCTAAAGCCAGACTTGGGTCCAAAAACATATATTGCATATGGCATTAAAGAAGAGCTTGGCAGGGGAGATTCAGTAACAAAACTTCACTGTGATATGTCTGATGCTGTGAATATTTTGACTCACACGGCTGAGGTAACGTTAACTGATGAACAGAACTGTGTTATTTCAAAACTGAAAAAAGCACACATTGCCCAAGATGAGAAAGAGCACTGTGCCCGAGAAAGGGTTGATGAATGCCTGAATGAAGGACCCTGGAAAGACCACAGAGAACAGGAGGATAACAAGTGTCCCGTTGACATCAATGGAAAAATCTTTCCAAATGATATGCCCACAATCTCCAGAGAAACAACAGAAACAGGTGGTGCTCTTTGGGATATCTTTCGGAGAGAGGATACTGATATGTTAGAAGCATATCTAAGGAAACACTCTAAAGAATTTAGGCATACTTATTGTTCTCCAGTTGAACAGGTTGTCCATCCAATTCATGACCAAAGTTTTTACTTGACTTTGGAACACAAGAAGAAGTTGAAGGAGGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAGAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTCCACACCAAGTCAGGAATCTTAAGTCATGCACAAAAGTAGCTGCAGACTTCGTGTCCCCAGAAAATGTTCATATGTGCCTGCATTTAACTGAAGAATTCCGTCGTCTTCCCAAGAATCACAAGGCTAGAGAAGACAAACTCGAGATAAAGAAGATGATCGTCTATGCTGTTGACCACGCTGTCAAAGAATTAGAAGCTTTAGTTAGATGTTCTTGA
Predicted protein sequences of Glyma15g11770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g11770.2 sequence type=predicted peptide gene model=Glyma15g11770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIVVSVCTGKSNHQTDHKLEFLRHSNSFGIRKKQNYLYAYTSPKSREKDTMTCVKNNFESSKKRKVQDTHKLDIIKSKSMGEEDILVCSKRTTELPFRKGLEANKCLTALKKKRILEDAILINNLEDDKVYVPSKTYSRSKARKMDDVKDTASRRCHQCMKKERAAYVPCTKCRKMYCMWCIRKWYSNLSIEDIAQECPFCQKNCNCNVCLSSRGMIKTSNKCIRDDEKVQYLQYTINLLLPFIQRVCEEQSQELEIEAKIQGKSRSEIEISQIPCENERIYCDHCATSFTDLYRSCPKCSIEICLNCCKEIRNGSISPRSELKFQYVNRGYDYMHGGDPLPVSCDLRTSKGHREIFTKWSANSDGSIRCAPKEMGGCGGSVLELKRLFPNGWISDLEAKARNMLKTYCKTEQATLQKEATSSCNSMIRAAFRDGTNDNNLYCPLSSDLINEGLFLFQKHWTKGEPIIVRDVLNQGTGLSWEPMVTWRALCENVVPGISSNMLEVTAIDCLASCEVEINTRTFFKGYTQGRTYRNLWPEMLKLKDWPPSHKFEDLLPRHYDEFIRCLPFQEYSDPRAGILNLAVKLPPHVLKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVTLTDEQNCVISKLKKAHIAQDEKEHCARERVDECLNEGPWKDHREQEDNKCPVDINGKIFPNDMPTISRETTETGGALWDIFRREDTDMLEAYLRKHSKEFRHTYCSPVEQVVHPIHDQSFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVHMCLHLTEEFRRLPKNHKAREDKLEIKKMIVYAVDHAVKELEALVRCS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
