Report for Sequence Feature Glyma15g11700
Feature Type: gene_model
Chromosome: Gm15
Start: 8630048
stop: 8631685
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g11700
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G11920 AT
Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr1:4023667-4025097 REVERSE LENGTH=384
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0016829 GO-mf
Annotation by Michelle Graham. GO Molecular Function: lyase activity
SoyBase N/A ISS
GO:0030570 GO-mf
Annotation by Michelle Graham. GO Molecular Function: pectate lyase activity
SoyBase N/A ISS
PF00544 PFAM
Pectate lyase
JGI ISS
UniRef100_B9RXH3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pectate lyase, putative n=1 Tax=Ricinus communis RepID=B9RXH3_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1MFJ5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MFJ5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g11700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g11700
Paralog Evidence Comments
Glyma09g00850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g11700 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g110500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g11700
Coding sequences of Glyma15g11700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g11700.1 sequence type=CDS gene model=Glyma15g11700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCACCTCTCCCACACTACTCTTGCTTTCATGCTTCATACTACACCTTGCATATTCAACAGAAAGTGCAGTTCTAAACAAGATAGACTCTTGCTGGCGTGCCAAATCAAATTGGGCATCAAATCGCCAAGCCTTGGCTAATTGTGGAATTGGCTTTGGCAAAGATTCAATTGGTGGCAAGTATGGATCAATATATAAAGTCACAGATCCCTCTGATGACCCCATAAGCCCAAAACCAGGCACACTTCGTTATGGTGTTATCCAAACACAGCCCCTTTGGATCATTTTTGCCAAAGATATGGTTATTAGGCTCGATAATGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATTGCAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTTATCATACATGGCATTAGCATTCATGATTGCAAACCAAGCAAGGCTGGCCTTGTAAGGAGTACCCCATCTCATCTTGGCCATCGTCGAGGCTCTGATGGGGATGGCATTAGCATATTTGCCTCCTCAAATATTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGCTTGATTGATGTTATTCATGCCTCAACTTCCATTACCATTTCTAACAATTACTTTACCCAACATGACAAAGTTATGCTACTAGGACACAGCGACGAATACACAGCAGATAAAAAAATGAAAGTAACAATAGCCTTCAACCGATTTGCTAGTGGTCTGATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCACATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCCATAGGTGGCAGTTCTAACCCAACCATTTTAAGTGAAGGAAACTACTATGTCGCTCCGAATAACCCTGCCACAAAACAGGTTACCAAGAGGGAAATGAAGGGAAAATTGAAAAATTGGAAATGGAGGTCTTCTAAGGATGCATTCTTAAACGGTGCTTATTTTGTTCCATCTGGGTATGGTAGTTGTGACCCAAATTATTCTCCTACTCAATATTTTACTGCTGTACCTGCTTCCTTGGTGCCCGCAATAACTCTTAATGCAGGTCCCTTGACTTGTGTTGTTGGTAAAGCATGTTAA
Predicted protein sequences of Glyma15g11700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g11700.1 sequence type=predicted peptide gene model=Glyma15g11700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATSPTLLLLSCFILHLAYSTESAVLNKIDSCWRAKSNWASNRQALANCGIGFGKDSIGGKYGSIYKVTDPSDDPISPKPGTLRYGVIQTQPLWIIFAKDMVIRLDNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPSKAGLVRSTPSHLGHRRGSDGDGISIFASSNIWIDHCFLARCADGLIDVIHASTSITISNNYFTQHDKVMLLGHSDEYTADKKMKVTIAFNRFASGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEGNYYVAPNNPATKQVTKREMKGKLKNWKWRSSKDAFLNGAYFVPSGYGSCDPNYSPTQYFTAVPASLVPAITLNAGPLTCVVGKAC*