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Report for Sequence Feature Glyma15g11680

Feature Type:gene_model
Chromosome:Gm15
Start:8605739
stop:8608639
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62300AT Annotation by Michelle Graham. TAIR10: WRKY family transcription factor | chr1:23016887-23019155 REVERSE LENGTH=553 SoyBaseE_val: 4.00E-156ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0080169GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to boron-containing substance deprivation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0044212GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_A7LHG6UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY23 (Fragment) n=1 Tax=Glycine max RepID=A7LHG6_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1MFJ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFJ2_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
WRKY149 WRKY Transcription Factor

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g00820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g110300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g11680.1   sequence type=CDS   gene model=Glyma15g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAACTTAACGGTGTGGGCGGAAAGACTTCATCTCCCAATAGCATCCATTCACCCATTTATCTCTCTCAGATTTCATTTTTCTTCTTCTTCTTCTCTCTCTTCTTTGTGCTTATTGTATTTTATGGACAAAGGATGGGGACTCACCCTTGATACCTCTTCCTCTCAATCTCTTCCATTATTCCCTTCCAACGATAATAAGATGTTTCCTCTCCTCGGATTCCCCGTCAACCTCAGCCGCGCCTCCAAGGAAGACGATGAAAACCGCAAAGTTGTCGGTGAAGTTGACTTCTTCTCTGATAGAAACAAACCTACACCTCCACCCTCTCACGACCACAACGTTAAACCCAACATCGTCAAGAAGGAAATCGATGAAACACCTCTTCACATTAATACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCTACCGTGGATGACGGGGTTTCATCTGATGCAGAAAATAAGCGAGCCAAAACCACTGAGCTTGCACAGTTGCAGGTGGAGCTTCAACGCATGAACTCTGAGAACAAGAAGCTGAAAGAGATGCTCAGCCATGTGACCGGTAACTACACCGCCTTGCAGATGCATCTTGTCACATTAATGCAACAGAACCAGCAGCGAACAGGAAGCACGGAAAATGAGGTTGTTCAGGGAAAGGTAGAGGATAAAAACGTTGGTGTTGGTGGAGGGAAGGTACCAAGACAGTTCCTTGATATAGGTCCCAGTGGCACAGCAGAAGTAGATGATCAAGTTTCGGATTCTTCTTCTGATGAAAGAACACGATCGAGCACACCTCAGAACCATAACATTGAAGCTGGAGCTAGAGATGGTGCGAGAAATAACAATGGTAAAAGCCAGTTGGGTAGGGAAGAGAGTCCAGACTCAGAATCACAAGGTTGGAGTCCCAATAAGCTTCAGAAAATGAACCCTTCCAACCCTATGGATCAATCCACTGCAGAAGCCACAATGAGAAAAGCTCGTGTATCAGTTCGTGCCCGATCAGAAGCTCCCATGATCAGTGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCCAAGGGGAATCCATGCCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGCTCAACGTTGTACTGATGATAGAACCATTTTGGTTACAACATATGAAGGCACGCATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCAACCACTACAGCTGCTGCTAGCATGTTGCTTTCTGGATCAATGTCCAGTGCAGATGGAATAATGAACCCAAATTTGCTAGCTAGAGCAATTCTTCCTTGCTCTACAAGCATGGCAACACTCTCAGCTTCAGCACCATTCCCCACTGTGACTTTGGACCTCACACACAACCCTAACCCATTGCAATTTCAAAGGCCTGGTGCCCCATTCCAAGTACCCTTCCTTCAAGCACAGCCTCAGAACTTTGGGTCAGGAGCCGCCCCAATTGCACAAGCACAAGCACTTTATAATCAATCAAAATTCTCTGGTCTTCAGTTGTCTCAGGATGTAGGATCTTCTCAATTAGCACCACAAGCTCCTAGACCACCCTTACAACCAAGCCAACAGCCCTCACTTGCTGACACAGTCAGCGCCGCCGCCTCCGCCATCACCGCCGATCCAAACTTCACCGCCGTGCTCGCCGCCGCCATCTCCTCCATCATAGGCAGTGCTCATAATTCAAACAACAACAACAGCAACAACAACACAAGCCGGACTACCATTAGCAGCTTTTCAGGAAACTGA

>Glyma15g11680.1   sequence type=predicted peptide   gene model=Glyma15g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNLTVWAERLHLPIASIHPFISLRFHFSSSSSLSSLCLLYFMDKGWGLTLDTSSSQSLPLFPSNDNKMFPLLGFPVNLSRASKEDDENRKVVGEVDFFSDRNKPTPPPSHDHNVKPNIVKKEIDETPLHINTGLQLLTANTGSDQSTVDDGVSSDAENKRAKTTELAQLQVELQRMNSENKKLKEMLSHVTGNYTALQMHLVTLMQQNQQRTGSTENEVVQGKVEDKNVGVGGGKVPRQFLDIGPSGTAEVDDQVSDSSSDERTRSSTPQNHNIEAGARDGARNNNGKSQLGREESPDSESQGWSPNKLQKMNPSNPMDQSTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQAQRCTDDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSTSMATLSASAPFPTVTLDLTHNPNPLQFQRPGAPFQVPFLQAQPQNFGSGAAPIAQAQALYNQSKFSGLQLSQDVGSSQLAPQAPRPPLQPSQQPSLADTVSAAASAITADPNFTAVLAAAISSIIGSAHNSNNNNSNNNTSRTTISSFSGN*







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