Glyma15g11630 - SoyBase

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Report for Sequence Feature Glyma15g11630

Feature Type:	gene_model
Chromosome:	Gm15
Start:	8571931
stop:	8574745
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g11630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G04470	AT	Annotation by Michelle Graham. TAIR10: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein \| chr4:2227963-2229226 REVERSE LENGTH=190	SoyBase	E_val: 9.00E-78	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005778	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG1944	KOG	Peroxisomal membrane protein MPV17 and related proteins	JGI		ISS
PTHR11266	Panther	PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2	JGI		ISS
PF04117	PFAM	Mpv17 / PMP22 family	JGI		ISS
UniRef100_B9RXI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal membrane protein 2, pxmp2, putative n=1 Tax=Ricinus communis RepID=B9RXI3_RICCO	SoyBase	E_val: 3.00E-75	ISS
UniRef100_C6SY13	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SY13_SOYBN	SoyBase	E_val: 3.00E-110	ISS

Expression Patterns of Glyma15g11630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g11630

Paralog	Evidence	Comments
Glyma09g00770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g11630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g109800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g11630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g11630

Limit To All Plant Sequences

>Glyma15g11630.2   sequence type=transcript   gene model=Glyma15g11630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAGGCGCAGTTACCTGTTCTGTTATTGAGTCAAAGGGTGTGAGTGAGTGTGAGCAAGATGGGTTCTTTGGCAAAGAAGGGACTCAACAATTACGTCAAACAGCTCCAGCAACACCCTTTGAGAACCAAGGGGTACTATCAGCGATCAGCGATGTTGTGTCTCAGAAACTTACTGGGATACAGAAACTTCAACTCAAACGTCTTCTTTTCAAAGTGATTTTCGGAGCTGCTTATCTTGGACCCTTTGGACACTTTTTTCATTTAATACTGGATAAAATTTTCAAAGGAAAGAGAGATTCAAAAACTGTGGCCAAGAAGGTTCTGATTGAACAGTTGACATCTAATCCTTGGAACAATTTGCTTTTCATGATTTACTACGGATTAGTTGTTGAAGGCCAACCTTGGGTGAATGTGAAAGCTAAAGTTAAGAAGGATTATCCATCAGTGCAGTATACATCATGGACGGTCTGGCCTGTTGTGGGGTGGATAAATCACAAATTCATGCCTCTTCATTTCCGTGTTGTTTTCCAAAGCTTAGTAGCATTTTTCTGGGGAGTATTCTTGAACCTTCGAGCACGATCTATGGCATTGATTAAAGCCTGAAGCAAAGAAGATTACTGTATATGCTCCTGCTTGCTAGGAAACTGTTACTCTTTCCAGTGTAGTTTGCATTAGTTTAAACTAATCAAAATAAGATCTGCTGTTCATGTTAATGTCTTGGCAAGATCTTTTAGTTTGTCTGATTATTTAGACATGGTTAATTTGCGGTGCTCGGAATATACAAGTTTGCGAATGTTAATGGGTGTTTAAACAAACGGTGATAAAATTGATTTTGAAGAAATGTATTTATG

Coding sequences of Glyma15g11630

Limit To All Plant Sequences

>Glyma15g11630.1   sequence type=CDS   gene model=Glyma15g11630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTTTGGCAAAGAAGGGACTCAACAATTACGTCAAACAGCTCCAGCAACACCCTTTGAGAACCAAGGTAATCACTGCAGGGGTACTATCAGCGATCAGCGATGTTGTGTCTCAGAAACTTACTGGGATACAGAAACTTCAACTCAAACGTCTTCTTTTCAAAGTGATTTTCGGAGCTGCTTATCTTGGACCCTTTGGACACTTTTTTCATTTAATACTGGATAAAATTTTCAAAGGAAAGAGAGATTCAAAAACTGTGGCCAAGAAGGTTCTGATTGAACAGTTGACATCTAATCCTTGGAACAATTTGCTTTTCATGATTTACTACGGATTAGTTGTTGAAGGCCAACCTTGGGTGAATGTGAAAGCTAAAGTTAAGAAGGATTATCCATCAGTGCAGTATACATCATGGACGGTCTGGCCTGTTGTGGGGTGGATAAATCACAAATTCATGCCTCTTCATTTCCGTGTTGTTTTCCAAAGCTTAGTAGCATTTTTCTGGGGAGTATTCTTGAACCTTCGAGCACGATCTATGGCATTGATTAAAGCCTGA

>Glyma15g11630.2   sequence type=CDS   gene model=Glyma15g11630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAGGCGCAGTTACCTGTTCTGTTATTGAGTCAAAGGGTGTGAGTGAGTGTGAGCAAGATGGGTTCTTTGGCAAAGAAGGGACTCAACAATTACGTCAAACAGCTCCAGCAACACCCTTTGAGAACCAAGGGGTACTATCAGCGATCAGCGATGTTGTGTCTCAGAAACTTACTGGGATACAGAAACTTCAACTCAAACGTCTTCTTTTCAAAGTGATTTTCGGAGCTGCTTATCTTGGACCCTTTGGACACTTTTTTCATTTAATACTGGATAAAATTTTCAAAGGAAAGAGAGATTCAAAAACTGTGGCCAAGAAGGTTCTGATTGAACAGTTGACATCTAATCCTTGGAACAATTTGCTTTTCATGATTTACTACGGATTAGTTGTTGAAGGCCAACCTTGGGTGAATGTGAAAGCTAAAGTTAAGAAGGATTATCCATCAGTGCAGTATACATCATGGACGGTCTGGCCTGTTGTGGGGTGGATAAATCACAAATTCATGCCTCTTCATTTCCGTGTTGTTTTCCAAAGCTTAGTAGCATTTTTCTGGGGAGTATTCTTGAACCTTCGAGCACGATCTATGGCATTGATTAAAGCCTGA

Predicted protein sequences of Glyma15g11630

Limit To All Plant Sequences

>Glyma15g11630.1   sequence type=predicted peptide   gene model=Glyma15g11630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLAKKGLNNYVKQLQQHPLRTKVITAGVLSAISDVVSQKLTGIQKLQLKRLLFKVIFGAAYLGPFGHFFHLILDKIFKGKRDSKTVAKKVLIEQLTSNPWNNLLFMIYYGLVVEGQPWVNVKAKVKKDYPSVQYTSWTVWPVVGWINHKFMPLHFRVVFQSLVAFFWGVFLNLRARSMALIKA*

>Glyma15g11630.2   sequence type=predicted peptide   gene model=Glyma15g11630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PGAVTCSVIESKGVSECEQDGFFGKEGTQQLRQTAPATPFENQGVLSAISDVVSQKLTGIQKLQLKRLLFKVIFGAAYLGPFGHFFHLILDKIFKGKRDSKTVAKKVLIEQLTSNPWNNLLFMIYYGLVVEGQPWVNVKAKVKKDYPSVQYTSWTVWPVVGWINHKFMPLHFRVVFQSLVAFFWGVFLNLRARSMALIKA*

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