SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04480 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2229649-2230845 FORWARD LENGTH=398 | SoyBase | E_val: 4.00E-128 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| UniRef100_I1MFI6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFI6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g11620 not represented in the dataset |
Glyma15g11620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g00750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g109700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g11620.1 sequence type=CDS gene model=Glyma15g11620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCATACAAACCTCAACCCTACTTTCTCATACTTCCATGTCTTCAAAGAAAATACATGCCGCAATCCACTTACGCACCATAAAGCAGGCAGAGGAATTAAAACCCAAAGACACAAGTCTAATGTTAGAAAAGAAGAGTTTCAACAGCACAATATCACATGATATTGGTGAACAACAGCATTCTACAAACCCTAACGCGCTTATTCAACTCTACGCAATCTTGGAAGCTGTAGCTGATAGAGTTGAAATGCACGACAACATTGGCGAGCAACGTGACAACTGGAACACGTTGCTCTTCAACTCCATCAACATGATTACACTCACTGCCACAACCATGGCTGGTGTTGCAGCCACGTGCGGTGCAGGTGCACCTCTTTTGGCTCTGAAGCTATCTTCTGCTCTTTTGTTTTCAGCAGCCACGGGGATGTCACTCATCATGAACAAGATCCAACCCTCTCAACTCACGGAGGAACAGCGCAACGCTTCTAGGTTGTTTAGGAACCTTCAGAGCGAAATAGAAACCACACTTGCACTCGGGAATAACCCTACGGAGGAAGATGTGAAGGGTGCAATGGAGAAGGTTTTGGCGCTCGACAAGGCTTTCCCACTTCCCTTGTTGGGAGCAATGCTTGAGAAATTCCCTAAGAAGTTTGAGCCAGCTGTGTGGTGGCCTTCTAAACCCTACGAGGGAAAAGGAAAGTCAGAGAGTGCTGTGCATCTGAAGGAGAGAATGGGAAAGATGAATGGATGGAGTGAAGAACTAGAAATGGAACTGAGGGAGGTTGTTGAAGTGGTGAAGAGAAAAGACAGTGAGGACTATGAGAGGCTTGGAAACATGGTTTTGAAGGTAAACAAGACTTTGGCCATTGCAGGGCCTTTGCTCACAGGAATTGCAGCTGCAGGAACTGCATTTATAGGCAATAATGGTTCTTGGGGAGCATTGGTGCCTCTCATGGCTGGGTCATTGGCTTCAGCAGTTAACAGCTTTGAGCATGGAGGGCAAGTAGGCATGGTTTTTGAAATGTACAGAGCCTCTGGGGGATTCTTCAAGATGTTGGAAACTTCTCTTGAATCAACTTTGGAAGAGGAAGATTTGGAGAGAAGGGAAAATGGGGAACTCTTTGAAATGAAGATGGCTTTGAAGTTGGGAAGGAGTGTGTCACAACTGAGGGAACTTGCTTCTAAATCAACTTCGTATCGCATGGAAGGAGTTCTTGACATAGACGAATTTGCCAGCAAACTTTTCTGA
>Glyma15g11620.1 sequence type=predicted peptide gene model=Glyma15g11620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASIQTSTLLSHTSMSSKKIHAAIHLRTIKQAEELKPKDTSLMLEKKSFNSTISHDIGEQQHSTNPNALIQLYAILEAVADRVEMHDNIGEQRDNWNTLLFNSINMITLTATTMAGVAATCGAGAPLLALKLSSALLFSAATGMSLIMNKIQPSQLTEEQRNASRLFRNLQSEIETTLALGNNPTEEDVKGAMEKVLALDKAFPLPLLGAMLEKFPKKFEPAVWWPSKPYEGKGKSESAVHLKERMGKMNGWSEELEMELREVVEVVKRKDSEDYERLGNMVLKVNKTLAIAGPLLTGIAAAGTAFIGNNGSWGALVPLMAGSLASAVNSFEHGGQVGMVFEMYRASGGFFKMLETSLESTLEEEDLERRENGELFEMKMALKLGRSVSQLRELASKSTSYRMEGVLDIDEFASKLF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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