Glyma15g11570 - SoyBase

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Report for Sequence Feature Glyma15g11570

Feature Type:	gene_model
Chromosome:	Gm15
Start:	8521887
stop:	8525127
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g11570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22010	AT	Annotation by Michelle Graham. TAIR10: SKU5 similar 4 \| chr4:11663429-11666463 FORWARD LENGTH=541	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1263	KOG	Multicopper oxidases	JGI		ISS
PTHR11709	Panther	MULTI-COPPER OXIDASE	JGI		ISS
PTHR11709:SF11	Panther	MULTICOPPER OXIDASE-RELATED	JGI		ISS
PF00394	PFAM	Multicopper oxidase	JGI		ISS
PF07731	PFAM	Multicopper oxidase	JGI		ISS
PF07732	PFAM	Multicopper oxidase	JGI		ISS
UniRef100_G7JJ92	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: L-ascorbate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7JJ92_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BFF1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BFF1 related cluster n=1 Tax=unknown RepID=UPI000233BFF1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g11570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g11570 not represented in the dataset	Glyma15g11570 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g11570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g109000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g11570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g11570

Limit To All Plant Sequences

>Glyma15g11570.1   sequence type=CDS   gene model=Glyma15g11570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACTATGCGAAGCTCTTTCTTCTCTCATTCTTGTTCTTGCACTTGCATTCCTTTACAACGACGTCAACTGTGAAGACCCATATAGATTCTTCACTTGGAAGCTCACCTATGGTGACATTTACCCTCTTGGTGTCAAGCAACAGGGTATCTTGATTAATGGGAAGTTCCCTGGGCCTCTCATAGACCCGGTTACAAATGACAACTTGATCATCAATGTGCATAACTACCTTAGGGAACCATTGCTTATATCATGGAATGGATTACAACAAAGGAGAAACTCATGGCAGGATGGAATTCATGGAACAAATTGTCCAATTCCACCTGGGAAAAACTACACTTATGTTCTCCAAAGCTGTCCTCTGATTCCTGTCCCTTTCCCTCCTGCAGGGGACTTCACCTTACTTGCTGGAGATTGGTTCAAGACACACTACTGTAGGCTGAATAAAATCCTGAATGATGGTCATAATCTTCCCTTCCCTCATGGACTTCTTATCAATGGACGTGGTTGGAATGGAACCACTTTCACTGTTGATAAAGGTAAGACTTACAGATTCGGGATATCAAATGTGGGGCTCACAACATCCATCAACTTCAGAATCCAGGGGCACAAGATGAAACTTGTGAAGCCTGCCAAAAATTACTACATAGATGTCTCCACAAGATTTACCAAACAGATACTCACAACAACTTCCATTCTTCACTACAACAATTCAAGCAATAGGGTATCTGGTCCCATTCCCCAAGATGTCATTGCTTCCTCTCTTTTTCAGGCCAGGACTATTCGATGGAACCTGACAGCAAGTAGACCTAGGCCAAACCCTCAGGGATCTTACCAGTATGGATTGATAAAACCCATTAGAACCATCATTTTGGAAAACTCTGCCCCTATTATCAATGGCAAGCAGAGGTATGCGATCAACGGCGTCTCATATGTTGCACCAGATATTCCGTTGAAACTAGCTGATTACTTCAACATCTCTGGAGTTTTCTCTGTTGGAAGAATTCCTACCAACACTAACAAAGGCAAATCCCTCCTCCAAACTTCTGTCATGGGGGCTAACTTCCATGAATTTGTGGAGATTGTGTTCCAAAACTGGGAGAACTTTTTGCAGTCATGGCATATTGATGGCTATTCTTTCTTTGGTGTGGGGTTTAGTAGCGGGCAGTGGACACCTACAAGTAGAGCATACTACAATCTAAGAGACGCTATTCCTAGATGCACCACTCAGGTGTACCCAAAGTCATGGGCTGCAATTTATATAGCGCTAGACAATGTGGGAATGTGGAATGTAAGGTCTGAGAATTGGGCAAGGCAATACTTGGGACAACAATTCTATCATAGAGTGTATACATCTTCCAAGTCATATGGAGAGATGAATATCCGATCCCAAAGAATGCACTTCTTTGTGGCAGGGCCAGAGGTCGCAACACTCTAG

Predicted protein sequences of Glyma15g11570

Limit To All Plant Sequences

>Glyma15g11570.1   sequence type=predicted peptide   gene model=Glyma15g11570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLCEALSSLILVLALAFLYNDVNCEDPYRFFTWKLTYGDIYPLGVKQQGILINGKFPGPLIDPVTNDNLIINVHNYLREPLLISWNGLQQRRNSWQDGIHGTNCPIPPGKNYTYVLQSCPLIPVPFPPAGDFTLLAGDWFKTHYCRLNKILNDGHNLPFPHGLLINGRGWNGTTFTVDKGKTYRFGISNVGLTTSINFRIQGHKMKLVKPAKNYYIDVSTRFTKQILTTTSILHYNNSSNRVSGPIPQDVIASSLFQARTIRWNLTASRPRPNPQGSYQYGLIKPIRTIILENSAPIINGKQRYAINGVSYVAPDIPLKLADYFNISGVFSVGRIPTNTNKGKSLLQTSVMGANFHEFVEIVFQNWENFLQSWHIDGYSFFGVGFSSGQWTPTSRAYYNLRDAIPRCTTQVYPKSWAAIYIALDNVGMWNVRSENWARQYLGQQFYHRVYTSSKSYGEMNIRSQRMHFFVAGPEVATL*

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