Glyma15g11380 - SoyBase

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Report for Sequence Feature Glyma15g11380

Feature Type:	gene_model
Chromosome:	Gm15
Start:	8333268
stop:	8337703
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g11380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11650	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:3914895-3917941 FORWARD LENGTH=405	SoyBase	E_val: 4.00E-162	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: poly(A) RNA binding	SoyBase	N/A	ISS
KOG0148	KOG	Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF67	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7JJ57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein n=1 Tax=Medicago truncatula RepID=G7JJ57_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MFG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFG7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g11380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g11380

Paralog	Evidence	Comments
Glyma13g27570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g11380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g106900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g11380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g11380

Limit To All Plant Sequences

>Glyma15g11380.1   sequence type=CDS   gene model=Glyma15g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCAGCAGCCAGGACCCGGCATGGCACCTCCCACCATGGGCCAGCAGCCGCAGCAACAGTACCAGCAGCAGCCTCCGCCGCAGCAGCAACAACCCTACGTCATGATGCCGCCGCAGCATCAGGCGCCGCAGCCTATGTGGGCCCCATCCGCCCAGCCTCCGCTGCCGCAGCAGCCTGCTAGCGCCGACGAGGTCCGAACCCTCTGGATCGGGGATCTGCAGTACTGGATGGACGAGAACTATCTCTACACCTGCTTTGCTCATACCGGCGAGGTTTCGTCAGTTAAAGTGATTCGGAACAAGCAAACTAGTCAATCTGAAGGTTATGGGTTTATTGAGTTTAATAGTCGTGCTGGAGCTGAGAGAATTCTCCAAACATATAATGGGGCTATTATGCCGAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAACTTTTAGTGCCGGTGAGAGGTCGCGTCAAGATGATTCTCCTGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTATCTTCTTCAGGAGACATTCAGGGCTCGTTACAACTCGGTGAAGGGTGCAAAAGTTGTCATTGATAGGCTAACTGGCCGTACCAAGGGGTATGGCTTTGTAAGGTTTTCAGAAGAGAGTGAGCAAATGAGAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGAGGATTGGACCAGCCTCTAATAAAACCCCTGCCACTCAGTCCCAGCCAAAAGCTTCATATCTGAATTCTCAACCTCAAGGCTCACAGAATGAGAATGATCCAAATAATACGACTATTTTTGTTGGCAATTTGGATCCTAATGTAACCGATGATCATCTGAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGTGCTGAAGAGGCCCTTCGGGTGTTGAATGGGACGCTGTTGGGTGGACAAAATGTGCGTCTTTCATGGGGTCGCAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGTGCTGCTGGTGCTGGTTCTGGTGGTGGATATTATGGGTATGCTGCTCAAGGATATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGATATCCTGGTTACCAAGCTCCTCAACAACAGCAGCAAATAGGATATAGTTGA

Predicted protein sequences of Glyma15g11380

Limit To All Plant Sequences

>Glyma15g11380.1   sequence type=predicted peptide   gene model=Glyma15g11380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMQQPGPGMAPPTMGQQPQQQYQQQPPPQQQQPYVMMPPQHQAPQPMWAPSAQPPLPQQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYNGAIMPNGGQSFRLNWATFSAGERSRQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTEMQGVLCSTRPMRIGPASNKTPATQSQPKASYLNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGAAGAGSGGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYPGYQAPQQQQQIGYS*

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