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Report for Sequence Feature Glyma15g11350

Feature Type:gene_model
Chromosome:Gm15
Start:8318676
stop:8322055
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04860AT Annotation by Michelle Graham. TAIR10: DERLIN-2.2 | chr4:2460135-2461378 FORWARD LENGTH=244 SoyBaseE_val: 1.00E-165ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
KOG0858 KOG Predicted membrane protein JGI ISS
PTHR11009Panther DER1-LIKE PROTEIN, DERLIN JGI ISS
PF04511PFAM Der1-like family JGI ISS
UniRef100_B9RXN5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Derlin-2, putative n=1 Tax=Ricinus communis RepID=B9RXN5_RICCO SoyBaseE_val: 9.00E-170ISS
UniRef100_I1MFG2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFG2_SOYBN SoyBaseE_val: 2.00E-178ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g27600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g106600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g11350.2   sequence type=transcript   gene model=Glyma15g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAAAGCAGGGCAAACAAAGCAAGAAGAACGCGATTGGTTCGTAACAAGCACGCGCTTCGTGATTCGTGTTGTCTTTGTCATTCGTCGTGTTCTGATCTTCTTGTGCCCCTTCTTCTTCTTCTTCCTCTTTGCATCGCCTCTTCCTTCATCAGCTATCTTCATCTGCTTCTGTCACATCAAGCATTCTCATACCGCTTCTCAGTTTCTCATTTTCCCAATCGCAGCTAAAAAATCCTTTGAGCCCTTTAACCTATTCTCAATAAGCAGAAATTAGGGAACGCAACAATGGCTCAAGCGGTTGAAGAATGGTATAAGCAGATGCCTGTCATCACGCGCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATGTAATCCCCTTTCTTCGCACTCTCACTTTTAGGGTTTCCAATTTTATTTTTTTATGAATTCGATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCTTGAGGAGAACTCGTTCAGGGGGAGGACTGCTGATTTCTTTTACATGCTCTTATTTGGTGCCACTGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTCTCTTTACTTTCACTGCTGCCTACCTTCCATGGGTTCTCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGGATGACGGGTCGTAGGCCGCTAAAAACACCATCATTCATCAAAGCACTATTTGCAGATGACCCAGTTGTTGTGGCACGGCCTGCTAATGTCAGATTTGCTCCCCCACCTGCTGAAGAACTTCACCAAGATTGAATGAATGGCAATCAAAATGTTTAGAGGATTAGCAACAGAACAGCAAAGCGGTTGACCGTGTAATATATAGATTTTAAACATCTTTTTTCGCGTGCATTTGTTAATTATTAGGATTTAAGGGGCAACTATGTCGAATGTTCAGAGTTTTAACTGAATGAGATCCTCTTTTCTCATCGTAATTTGTCAGACACTACCTTGTAGATATTTATATACTCTTGTATTCCACAAAGTTTTTTTAAGCTAATTAAGTCAGCAAATTTGGTTCTTCTATTTAAAACTCTGTAATCCTCTCTCTTTTTTTAATCCAAATATTTGAGATTTTATGATGA

>Glyma15g11350.3   sequence type=transcript   gene model=Glyma15g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAAAGCAGGGCAAACAAAGCAAGAAGAACGCGATTGGTTCGTAACAAGCACGCGCTTCGTGATTCGTGTTGTCTTTGTCATTCGTCGTGTTCTGATCTTCTTGTGCCCCTTCTTCTTCTTCTTCCTCTTTGCATCGCCTCTTCCTTCATCAGCTATCTTCATCTGCTTCTGTCACATCAAGCATTCTCATACCGCTTCTCAGTTTCTCATTTTCCCAATCGCAGCTAAAAAATCCTTTGAGCCCTTTAACCTATTCTCAATAAGCAGAAATTAGGGAACGCAACAATGGCTCAAGCGGTTGAAGAATGGTATAAGCAGATGCCTGTCATCACGCGCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCTTGAGGAGAACTCGTTCAGGGGGAGGACTGCTGATTTCTTTTACATGCTCTTATTTGGTGCCACTGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTCTCTTTACTTTCACTGCTGCCTACCTTCCATGGGTGCGTAAGCTCTATAGGATAGGGTTCTCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGGATGACGGGTCGTAGGCCGCTAAAAACACCATCATTCATCAAAGCACTATTTGCAGATGACCCAGTTGTTGTGGCACGGCCTGCTAATGTCAGATTTGCTCCCCCACCTGCTGAAGAACTTCACCAAGATTGAATGAATGGCAATCAAAATGTTTAGAGGATTAGCAACAGAACAGCAAAGCGGTTGACCGTGTAATATATAGATTTTAAACATCTTTTTTCGCGTGCATTTGTTAATTATTAGGATTTAAGGGGCAACTATGTCGAATGTTCAGAGTTTTAACTGAATGAGATCCTCTTTTCTCATCGTAATTTGTCAGACACTACCTTGTAGATATTTATATACTCTTGTATTCCACAAAGTTTTTTTAAGCTAATTAAGTCAGCAAATTTGGTTCTTCTATTTAAAACTCTGTAATCCTCTCTCTTTTTTTAATCCAAATATTTGAGATTTTATGATGA

>Glyma15g11350.1   sequence type=CDS   gene model=Glyma15g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAGCGGTTGAAGAATGGTATAAGCAGATGCCTGTCATCACGCGCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCTTGAGGAGAACTCGTTCAGGGGGAGGACTGCTGATTTCTTTTACATGCTCTTATTTGGTGCCACTGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTCTCTTTACTTTCACTGCTGCCTACCTTCCATGGGTTCTCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGGATGACGGGTCGTAGGCCGCTAAAAACACCATCATTCATCAAAGCACTATTTGCAGATGACCCAGTTGTTGTGGCACGGCCTGCTAATGTCAGATTTGCTCCCCCACCTGCTGAAGAACTTCACCAAGATTGA

>Glyma15g11350.2   sequence type=CDS   gene model=Glyma15g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCGATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCTTGAGGAGAACTCGTTCAGGGGGAGGACTGCTGATTTCTTTTACATGCTCTTATTTGGTGCCACTGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTCTCTTTACTTTCACTGCTGCCTACCTTCCATGGGTTCTCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGGGGATGATTGCTGGTCATGCATATTATTTTCTTGAAGATGTTTATCCTCGGATGACGGGTCGTAGGCCGCTAAAAACACCATCATTCATCAAAGCACTATTTGCAGATGACCCAGTTGTTGTGGCACGGCCTGCTAATGTCAGATTTGCTCCCCCACCTGCTGAAGAACTTCACCAAGATTGA

>Glyma15g11350.3   sequence type=CDS   gene model=Glyma15g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAGCGGTTGAAGAATGGTATAAGCAGATGCCTGTCATCACGCGCTCTTATCTCACCGCTGCTGTTGTCACCACCATCGGATGTTCCCTTGATATAATTTCTCCGTATCATTTGTACTTGAACCCTAGATTGGTGGTGAAGCAATATCAGTTTTGGCGTCTGGTTACTAATTTCTTGTACTTTCGTAAAATGGACTTGGATTTCCTGTTTCATATGTTTTTTCTTGCCCGTTACTGCAAGCTTCTTGAGGAGAACTCGTTCAGGGGGAGGACTGCTGATTTCTTTTACATGCTCTTATTTGGTGCCACTGTATTGACTGGAATTGTTCTTCTTGGGGGCATGATACCTTATTTATCAGAGTCGTTTGCAAAAATAATATTCCTTAGCAACTCATTGACATTTATGATGGTTTACGTGTGGAGCAAACAAAATCCCTTCATTCACATGAGCTTCCTGGGTCTCTTTACTTTCACTGCTGCCTACCTTCCATGGGTGCGTAAGCTCTATAGGATAGGGTTCTCTTGGGGTTCTCTGTACTCGTTGGTGCTAGTGCTTGGGTGGATCTACTGGGGATGA

>Glyma15g11350.1   sequence type=predicted peptide   gene model=Glyma15g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLDIISPYHLYLNPRLVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLLGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADDPVVVARPANVRFAPPPAEELHQD*

>Glyma15g11350.2   sequence type=predicted peptide   gene model=Glyma15g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSIISPYHLYLNPRLVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLLGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADDPVVVARPANVRFAPPPAEELHQD*

>Glyma15g11350.3   sequence type=predicted peptide   gene model=Glyma15g11350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQAVEEWYKQMPVITRSYLTAAVVTTIGCSLDIISPYHLYLNPRLVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLLGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVRKLYRIGFSWGSLYSLVLVLGWIYWG*







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