SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04880 | AT | Annotation by Michelle Graham. TAIR10: adenosine/AMP deaminase family protein | chr4:2465055-2467103 REVERSE LENGTH=355 | SoyBase | E_val: 1.00E-176 | ISS |
| GO:0006154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: adenosine catabolic process | SoyBase | N/A | ISS |
| GO:0009168 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine ribonucleoside monophosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004000 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenosine deaminase activity | SoyBase | N/A | ISS |
| GO:0019239 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: deaminase activity | SoyBase | N/A | ISS |
| KOG1097 | KOG | Adenine deaminase/adenosine deaminase | JGI | ISS | |
| PTHR11409 | Panther | ADENOSINE DEAMINASE | JGI | ISS | |
| PTHR11409:SF21 | Panther | ADENOSINE DEAMINASE-LIKE PROTEIN | JGI | ISS | |
| PF00962 | PFAM | Adenosine/AMP deaminase | JGI | ISS | |
| UniRef100_G7JI13 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenosine deaminase-like protein n=1 Tax=Medicago truncatula RepID=G7JI13_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MFF9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFF9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g11310 not represented in the dataset |
Glyma15g11310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g27650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g106200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g11310.2 sequence type=transcript gene model=Glyma15g11310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTTCATTCACTCCCTAACATAGCAATTACTACCATTTACCAAAGTAAACCCAGAGATGGAGTGGTGTGTGTCAATGCCAAAGATTGAGCTGCATGCTCACCTCAATGGATCCATCCGAGACTCCACACTTCTTGAACTCACTAAGGCTTTGATTGGAAAGGGTGTCATGAATTTCTCCGAAGTGGAGCATATCATCCTCAAATATAACCGTTCCCTAAAAGAAGTTTTCAAGCTGTTCGACCTAATCCACATTCTCACCACTGATCACAACACTGTTACAAGAATTACCAGAGAAGTTATTGAGGATTTTGCATCAGAGAATGTTGTCTATCTGGAGTTGAGGACCACTCCAAAGAAAAATGATTCTGTGGGAATGAGCAAACACTCTTATGTTGAAGCTGTACTGAAAGGTCTAAGATCAATCACTTCAGTTGATGTGGATTTCATTCCACATTGTGAAGATTCAAAGACTCTTTTTACTCCTGCACCGGTTATTAATGGACATGTGAGAAAAAAAATCTTTGTTAGGCTTCTCTTGAGCATTGACAGAAGGGAGACAACAGAAGCTGCAATGGAAACTGTCAAGCTTGCATTGGAAATGAGGCCTTATGGGGTAGTTGGAATTGACCTCTCTGGAAATCCAAGTATTGGTGATTGGACCACATATTTGCCAGCATTGAAATTTGCTCGAGAACAAGGTCTTTATGTAACACTTCATTGTGGCGAGTTACCTAATTCAAAGGAGATAAAAAATATGCTTGACTTCCGTCCCCAAAGGATTGGACATGCTTGTTTCTTTGAGGATGAACACTGGAGACAGCTGAAGTCGTCGAACATTCCGGTTGAAATTTGCTTGACATCAAACGTTAGGACAATGACTGTTCCATCTATAGATGTTCACCACTTTGCTCATTTGTACAACGCAAAACATCCTTTAGCCCTGTGTACTGATGACTCGGGAGTCTTCTCTACCTGTCTCTCCAAGGAATACAAAATTGCTGCTGATTCATTTGGGCTGGGAAGGAGGGAAATGTTTGAGCTATCAAGGAATGCTGTTGAGCATATATTCGCAGATAGCAAAGTAAAGGAGGATTTAAGAAAAATTTTCAATTCAGTGGCAAAAAAATATGGAAGTGTAACCACAGTTTCATCTTTAGAGAATATCTGCATTTAGATATAATTAATATTAGAGCTTTGTTGATAAAAAAAACAAAATATTAGAGCTTAGCTAACGATCATGCTGGGGATTGCCCCTTATCCTAGTTTGAAGTTGGTAATCGAGTCCTTCACGTGCAAAAAAAAGAATGTGTATAAGTGATAAAATAAGGGTGTAGGATTCACATTTGATTTAATGAGTATTTAAATTCAAATCAGCAGCAATGTTGTCCTTATTATAATTTTATATCCATGCAAATGGTCCTTGATGGAAATTACTCAATCAAGTGATTATTCA
>Glyma15g11310.1 sequence type=CDS gene model=Glyma15g11310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTGGTGTGTGTCAATGCCAAAGATTGAGCTGCATGCTCACCTCAATGGATCCATCCGAGACTCCACACTTCTTGAACTCACTAAGGCTTTGATTGGAAAGGGTGTCATGAATTTCTCCGAAGTGGAGCATATCATCCTCAAATATAACCGTTCCCTAAAAGAAGTTTTCAAGCTGTTCGACCTAATCCACATTCTCACCACTGATCACAACACTGTTACAAGAATTACCAGAGAAGTTATTGAGGATTTTGCATCAGAGAATGTTGTCTATCTGGAGTTGAGGACCACTCCAAAGAAAAATGATTCTGTGGGAATGAGCAAACACTCTTATGTTGAAGCTGTACTGAAAGGTCTAAGATCAATCACTTCAGTTGATGTGGATTTCATTCCACATTGTGAAGATTCAAAGACTCTTTTTACTCCTGCACCGGTTATTAATGGACATGTGAGAAAAAAAATCTTTGTTAGGCTTCTCTTGAGCATTGACAGAAGGGAGACAACAGAAGCTGCAATGGAAACTGTCAAGCTTGCATTGGAAATGAGGCCTTATGGGGTAGTTGGAATTGACCTCTCTGGAAATCCAAGTATTGGTGATTGGACCACATATTTGCCAGCATTGAAATTTGCTCGAGAACAAGGTCTTTATGTAACACTTCATTGTGGCGAGTTACCTAATTCAAAGGAGATAAAAAATATGCTTGACTTCCGTCCCCAAAGGATTGGACATGCTTGTTTCTTTGAGGATGAACACTGGAGACAGCTGAAGTCGTCGAACATTCCGGTTGAAATTTGCTTGACATCAAACGTTAGGACAATGACTGTTCCATCTATAGATGTTCACCACTTTGCTCATTTGTACAACGCAAAACATCCTTTAGCCCTGTGTACTGATGACTCGGGAGTCTTCTCTACCTGTCTCTCCAAGGAATACAAAATTGCTGCTGATTCATTTGGGCTGGGAAGGAGGGAAATGTTTGAGCTATCAAGGAATGCTGTTGAGCATATATTCGCAGATAGCAAAGTAAAGGAGGATTTAAGAAAAATTTTCAATTCAGTGGCAAAAAAATATGGAAGTGTAACCACAGTTTCATCTTTAGAGAATATCTGCATTTAG >Glyma15g11310.2 sequence type=CDS gene model=Glyma15g11310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTGGTGTGTGTCAATGCCAAAGATTGAGCTGCATGCTCACCTCAATGGATCCATCCGAGACTCCACACTTCTTGAACTCACTAAGGCTTTGATTGGAAAGGGTGTCATGAATTTCTCCGAAGTGGAGCATATCATCCTCAAATATAACCGTTCCCTAAAAGAAGTTTTCAAGCTGTTCGACCTAATCCACATTCTCACCACTGATCACAACACTGTTACAAGAATTACCAGAGAAGTTATTGAGGATTTTGCATCAGAGAATGTTGTCTATCTGGAGTTGAGGACCACTCCAAAGAAAAATGATTCTGTGGGAATGAGCAAACACTCTTATGTTGAAGCTGTACTGAAAGGTCTAAGATCAATCACTTCAGTTGATGTGGATTTCATTCCACATTGTGAAGATTCAAAGACTCTTTTTACTCCTGCACCGGTTATTAATGGACATGTGAGAAAAAAAATCTTTGTTAGGCTTCTCTTGAGCATTGACAGAAGGGAGACAACAGAAGCTGCAATGGAAACTGTCAAGCTTGCATTGGAAATGAGGCCTTATGGGGTAGTTGGAATTGACCTCTCTGGAAATCCAAGTATTGGTGATTGGACCACATATTTGCCAGCATTGAAATTTGCTCGAGAACAAGGTCTTTATGTAACACTTCATTGTGGCGAGTTACCTAATTCAAAGGAGATAAAAAATATGCTTGACTTCCGTCCCCAAAGGATTGGACATGCTTGTTTCTTTGAGGATGAACACTGGAGACAGCTGAAGTCGTCGAACATTCCGGTTGAAATTTGCTTGACATCAAACGTTAGGACAATGACTGTTCCATCTATAGATGTTCACCACTTTGCTCATTTGTACAACGCAAAACATCCTTTAGCCCTGTGTACTGATGACTCGGGAGTCTTCTCTACCTGTCTCTCCAAGGAATACAAAATTGCTGCTGATTCATTTGGGCTGGGAAGGAGGGAAATGTTTGAGCTATCAAGGAATGCTGTTGAGCATATATTCGCAGATAGCAAAGTAAAGGAGGATTTAAGAAAAATTTTCAATTCAGTGGCAAAAAAATATGGAAGTGTAACCACAGTTTCATCTTTAGAGAATATCTGCATTTAG
>Glyma15g11310.1 sequence type=predicted peptide gene model=Glyma15g11310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEWCVSMPKIELHAHLNGSIRDSTLLELTKALIGKGVMNFSEVEHIILKYNRSLKEVFKLFDLIHILTTDHNTVTRITREVIEDFASENVVYLELRTTPKKNDSVGMSKHSYVEAVLKGLRSITSVDVDFIPHCEDSKTLFTPAPVINGHVRKKIFVRLLLSIDRRETTEAAMETVKLALEMRPYGVVGIDLSGNPSIGDWTTYLPALKFAREQGLYVTLHCGELPNSKEIKNMLDFRPQRIGHACFFEDEHWRQLKSSNIPVEICLTSNVRTMTVPSIDVHHFAHLYNAKHPLALCTDDSGVFSTCLSKEYKIAADSFGLGRREMFELSRNAVEHIFADSKVKEDLRKIFNSVAKKYGSVTTVSSLENICI* >Glyma15g11310.2 sequence type=predicted peptide gene model=Glyma15g11310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEWCVSMPKIELHAHLNGSIRDSTLLELTKALIGKGVMNFSEVEHIILKYNRSLKEVFKLFDLIHILTTDHNTVTRITREVIEDFASENVVYLELRTTPKKNDSVGMSKHSYVEAVLKGLRSITSVDVDFIPHCEDSKTLFTPAPVINGHVRKKIFVRLLLSIDRRETTEAAMETVKLALEMRPYGVVGIDLSGNPSIGDWTTYLPALKFAREQGLYVTLHCGELPNSKEIKNMLDFRPQRIGHACFFEDEHWRQLKSSNIPVEICLTSNVRTMTVPSIDVHHFAHLYNAKHPLALCTDDSGVFSTCLSKEYKIAADSFGLGRREMFELSRNAVEHIFADSKVKEDLRKIFNSVAKKYGSVTTVSSLENICI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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