SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21770 | AT | Annotation by Michelle Graham. TAIR10: Pseudouridine synthase family protein | chr4:11564028-11566345 REVERSE LENGTH=472 | SoyBase | E_val: 0 | ISS |
| GO:0001522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pseudouridine synthesis | SoyBase | N/A | ISS |
| GO:0009451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA modification | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0009982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pseudouridine synthase activity | SoyBase | N/A | ISS |
| KOG1919 | KOG | RNA pseudouridylate synthases | JGI | ISS | |
| PTHR10436 | Panther | RIBOSOMAL PSEUDOURIDINE SYNTHASE | JGI | ISS | |
| PTHR10436:SF42 | Panther | RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN | JGI | ISS | |
| PF00849 | PFAM | RNA pseudouridylate synthase | JGI | ISS | |
| UniRef100_G7KYN3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA pseudourine synthase n=1 Tax=Medicago truncatula RepID=G7KYN3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BE9C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BE9C related cluster n=1 Tax=unknown RepID=UPI000233BE9C | SoyBase | E_val: 0 | ISS |
|
Glyma15g11300 not represented in the dataset |
Glyma15g11300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g27660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g106100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g11300.2 sequence type=transcript gene model=Glyma15g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTTTCAAGATACATTTATTACTAACTTCATGTGGCACCAAGATTGAGCCCTCTAATAACGGGCCGACATTTTTTCAAATCAAAACCCGCCCCAACCTGATAATTGTGAAGAAGAAGAGGAAGCTCGGAGTCGAAGACACGTCACAGGAGTGTAAGTAAGCATGACCTCGGTGGCGATGACGGTGGCGTCAATGTTGTTCTCTGGTAGCTGCCGGAGCCTCGCCATGCCCGCGGCGGCGCGCGCAGTTCGCATCTCGCGAGCAGCGCTCGTCAATAACCGTAACAAGCACCCTCCAAGTTGGTGCTGTCGGAGTTCACACAACAGTAACACTGCACTCGCCGGTGAAGCTGAATTCTTAACAACCGACGCCGGTATCTTAAACGCCACCTCTTCTTCCGATAGTTTCCGGAAGTATGACCGGTTGCTTCCATGTCCATCGCACAAAACTCCACCGAGAATTGAACACTTAGTTGTATCAGAAGGAGGACCTGTGTTGGAACATATTTGCAAGGCTCTGGATCTTCCTCCTTTGTACGTTTCAGATCTGATTCAATTTGGAGCTGTGTACTACGCTCTTGTTTGTCCCCAGCCTCCTCCGAATGCCACCGAAGAGCAAATTAGGGTATTCAAAGAAGTAACGGAACCTTCGGTGTTGCGTAAAAGAGCTTCCATCAAAGGCAAAACTGTGCGAGAGGCACAGAAAACTTTCCGCGTAACTCACGTGGATCAATTTGTTGAGCCAGGGACTTATTTGCGAGTGCATGTGCACCCGAAACGCTCTCCTAGGTGCTATGAGATTGATTGGAGATCAAGGATCATAACTGTGGCGGAATCCTACGTAGTTTTGGATAAACCTGCTGGTACATCAGTAGGTGGGACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCCTTGGGAATGACAACCCCTTTGATGACTACCCATCAAATTGATAATTGCACTGAAGGCTGTGTGGTATTGGCTAGGACTAAAGAGTATTGCTCCGTCTTTCATGGCAAAATCAGGGAGAAAAAGGTGAAGAAGTTCTATCTTGCTCTTGCAGCTTTTCCTTTGCCAACTGGAATCATTACCCACTATATGCGTCCTATTGACATGGCTCCTAGACTTATTTCTGAAGATTTTATCAAGGGATGGCATCTGTGTCAACTTGAGGTCCTGGAATGCAGAAAGGTTCCCTGGCCAGCTACTGCTATACAAGACAAGTATTGTATTGAAGACTGTGGGTGGCCTTCTCAAGATTATGCATATGAGTGCAAAATCAACCTTCTTACTGATTCGAGCTCAATTTGCTGCCTATAAGGCACCATTAATTGGTGATTCTATGTATATGCCAGCTGCAATTGCGAATATGAGTAATCCTGGACTTAATCCGTTTGGAAAATACAAGAAAGATTTCAGTAGTGAGAGTGAAAAAGAAACAGCGGTTGTAAATTGGATTGCACAACATGGAAAAGAGCCGAGTGTTGCAATTGGCCTTCAAGCATGTCAAATTTCATGGGATGATGATGAACACTTTTACGAAGCTAGTTCACCTTGGTGGAGGTGTTAAAATGCTTGAAATGATGTGTGCTTGGGTTGAGGATATGGATCACCTTTATAGCTATGTTTTCATCTTGCCTCAGTTTTAAATGCAGATATTCAGAAGGTGGAAGAGTGGTCACGGATCACTGTATGCTGGTTTCTCCTTCTGTGGCATAGGAATGCAATATTTTCTTGCTGTAGAGGGGAGGGCAATGAAAATATTGCTGGTTTGAAAAGAGAAACCCAAATAAATGGAAAAGAAGAGGAGCTTCATATAGGGATTTAAATCGTGCATGCTGTCATATACTGGTGACTGGTGAGCCTTGTACCACCCTTTCTAGCAGAATCAAGTCTGAACAGGTAAACCAGATGTTTGGATCTTCACGGATAAAGAAGTCTTTTTGAAAAGAGAGTTTAATTCATGTATTTTACTAGGAGATTGAAAGAACTAAGAAAATGTTGTAACTTATTGGAAACATCTGATCAGGCTGTGTTATTAATGCCTTAAGCTCGCATCAACCTCAAATTGTTTGTACTGGCATTTCCCATTCTCTGTCGTGTTTTGGCAAGGGAGCCTTGTTTATGCTTGGCAATCAATTGCTTGTACTAACTTGGTAGTGGTTTTGGAATTCTTTTCAAACAGTTTTAATCTTATAGTAATATCTCAGTTGTAATGCCACGCGAGGACCAAGCAAGCAACGCATCCCTTAACATTT
>Glyma15g11300.1 sequence type=CDS gene model=Glyma15g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCTCGGTGGCGATGACGGTGGCGTCAATGTTGTTCTCTGGTAGCTGCCGGAGCCTCGCCATGCCCGCGGCGGCGCGCGCAGTTCGCATCTCGCGAGCAGCGCTCGTCAATAACCGTAACAAGCACCCTCCAAGTTGGTGCTGTCGGAGTTCACACAACAGTAACACTGCACTCGCCGGTGAAGCTGAATTCTTAACAACCGACGCCGGTATCTTAAACGCCACCTCTTCTTCCGATAGTTTCCGGAAGTATGACCGGTTGCTTCCATGTCCATCGCACAAAACTCCACCGAGAATTGAACACTTAGTTGTATCAGAAGGAGGACCTGTGTTGGAACATATTTGCAAGGCTCTGGATCTTCCTCCTTTGTACGTTTCAGATCTGATTCAATTTGGAGCTGTGTACTACGCTCTTGTTTGTCCCCAGCCTCCTCCGAATGCCACCGAAGAGCAAATTAGGGTATTCAAAGAAGTAACGGAACCTTCGGTGTTGCGTAAAAGAGCTTCCATCAAAGGCAAAACTGTGCGAGAGGCACAGAAAACTTTCCGCGTAACTCACGTGGATCAATTTGTTGAGCCAGGGACTTATTTGCGAGTGCATGTGCACCCGAAACGCTCTCCTAGGTGCTATGAGATTGATTGGAGATCAAGGATCATAACTGTGGCGGAATCCTACGTAGTTTTGGATAAACCTGCTGGTACATCAGTAGGTGGGACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCCTTGGGAATGACAACCCCTTTGATGACTACCCATCAAATTGATAATTGCACTGAAGGCTGTGTGGTATTGGCTAGGACTAAAGAGTATTGCTCCGTCTTTCATGGCAAAATCAGGGAGAAAAAGGTGAAGAAGTTCTATCTTGCTCTTGCAGCTTTTCCTTTGCCAACTGGAATCATTACCCACTATATGCGTCCTATTGACATGGCTCCTAGACTTATTTCTGAAGATTTTATCAAGGGATGGCATCTGTGTCAACTTGAGGTCCTGGAATGCAGAAAGGTTCCCTGGCCAGCTACTGCTATACAAGACAAGTATTGTATTGAAGACTGTGGGTGGCCTTCTCAAGATTATGCATATGAGTGCAAAATCAACCTTCTTACTGGTAAAACACATCAGATTCGAGCTCAATTTGCTGCCTATAAGGCACCATTAATTGGTGATTCTATGTATATGCCAGCTGCAATTGCGAATATGAGTAATCCTGGACTTAATCCGTTTGGAAAATACAAGAAAGATTTCAGTAGTGAGAGTGAAAAAGAAACAGCGGTTGTAAATTGGATTGCACAACATGGAAAAGAGCCGAGTGTTGCAATTGGCCTTCAAGCATGTCAAATTTCATGGGATGATGATGAACACTTTTACGAAGCTAGTTCACCTTGGTGGAGGTGTTAA >Glyma15g11300.2 sequence type=CDS gene model=Glyma15g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCTCGGTGGCGATGACGGTGGCGTCAATGTTGTTCTCTGGTAGCTGCCGGAGCCTCGCCATGCCCGCGGCGGCGCGCGCAGTTCGCATCTCGCGAGCAGCGCTCGTCAATAACCGTAACAAGCACCCTCCAAGTTGGTGCTGTCGGAGTTCACACAACAGTAACACTGCACTCGCCGGTGAAGCTGAATTCTTAACAACCGACGCCGGTATCTTAAACGCCACCTCTTCTTCCGATAGTTTCCGGAAGTATGACCGGTTGCTTCCATGTCCATCGCACAAAACTCCACCGAGAATTGAACACTTAGTTGTATCAGAAGGAGGACCTGTGTTGGAACATATTTGCAAGGCTCTGGATCTTCCTCCTTTGTACGTTTCAGATCTGATTCAATTTGGAGCTGTGTACTACGCTCTTGTTTGTCCCCAGCCTCCTCCGAATGCCACCGAAGAGCAAATTAGGGTATTCAAAGAAGTAACGGAACCTTCGGTGTTGCGTAAAAGAGCTTCCATCAAAGGCAAAACTGTGCGAGAGGCACAGAAAACTTTCCGCGTAACTCACGTGGATCAATTTGTTGAGCCAGGGACTTATTTGCGAGTGCATGTGCACCCGAAACGCTCTCCTAGGTGCTATGAGATTGATTGGAGATCAAGGATCATAACTGTGGCGGAATCCTACGTAGTTTTGGATAAACCTGCTGGTACATCAGTAGGTGGGACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCCTTGGGAATGACAACCCCTTTGATGACTACCCATCAAATTGATAATTGCACTGAAGGCTGTGTGGTATTGGCTAGGACTAAAGAGTATTGCTCCGTCTTTCATGGCAAAATCAGGGAGAAAAAGGTGAAGAAGTTCTATCTTGCTCTTGCAGCTTTTCCTTTGCCAACTGGAATCATTACCCACTATATGCGTCCTATTGACATGGCTCCTAGACTTATTTCTGAAGATTTTATCAAGGGATGGCATCTGTGTCAACTTGAGGTCCTGGAATGCAGAAAGGTTCCCTGGCCAGCTACTGCTATACAAGACAAGTATTGTATTGAAGACTGTGGGTGGCCTTCTCAAGATTATGCATATGAGTGCAAAATCAACCTTCTTACTGATTCGAGCTCAATTTGCTGCCTATAA
>Glyma15g11300.1 sequence type=predicted peptide gene model=Glyma15g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSVAMTVASMLFSGSCRSLAMPAAARAVRISRAALVNNRNKHPPSWCCRSSHNSNTALAGEAEFLTTDAGILNATSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLPTGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQDYAYECKINLLTGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYKKDFSSESEKETAVVNWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWRC* >Glyma15g11300.2 sequence type=predicted peptide gene model=Glyma15g11300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSVAMTVASMLFSGSCRSLAMPAAARAVRISRAALVNNRNKHPPSWCCRSSHNSNTALAGEAEFLTTDAGILNATSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLPTGIITHYMRPIDMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQDYAYECKINLLTDSSSICCL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
