Glyma15g11270 - SoyBase

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Report for Sequence Feature Glyma15g11270

Feature Type:	gene_model
Chromosome:	Gm15
Start:	8260564
stop:	8263946
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g11270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61800	AT	Annotation by Michelle Graham. TAIR10: glucose-6-phosphate/phosphate translocator 2 \| chr1:22824527-22826459 FORWARD LENGTH=388	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0009643	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic acclimation	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0010109	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of photosynthesis	SoyBase	N/A	ISS
GO:0015712	GO-bp	Annotation by Michelle Graham. GO Biological Process: hexose phosphate transport	SoyBase	N/A	ISS
GO:0015713	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphoglycerate transport	SoyBase	N/A	ISS
GO:0015714	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphoenolpyruvate transport	SoyBase	N/A	ISS
GO:0015760	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose-6-phosphate transport	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0035436	GO-bp	Annotation by Michelle Graham. GO Biological Process: triose phosphate transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005315	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic phosphate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015120	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoglycerate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015152	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
GO:0071917	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triose-phosphate transmembrane transporter activity	SoyBase	N/A	ISS
KOG1441	KOG	Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter	JGI		ISS
PTHR11132	Panther	SOLUTE CARRIER FAMILY 35	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_B9RXP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate/phosphate translocator 2, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RXP8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00018C72DD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00018C72DD related cluster n=1 Tax=unknown RepID=UPI00018C72DD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g11270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g11270 not represented in the dataset	Glyma15g11270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g11270

Paralog	Evidence	Comments
Glyma13g27680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g11270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g105900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g11270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g11270

Limit To All Plant Sequences

>Glyma15g11270.2   sequence type=transcript   gene model=Glyma15g11270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCCAAGTCTAGCATCTCTTCCTCACCTAGGAAAAACCGTTTCCAACTCTACCATTTTCCCACCAACCCTCCACTCTCTTCCTCAAAACAATCGTTAATCTCTTCTACATTGTGAAGTCTGATATTCTCTAAGTAGACAACACAAACACACCTCAATTTATAGCACCCATCTTTCTTTTCTCCCACAAATTCAGCTCCATTTTGTTACACGTTCAAATAATAAGCCAAGAAGCCACCATGATCTCTTCAATGAAGTGCACAGCCTCATCTCTCACATGTTCCGCTTTCTCAAACAGAAAGATTCCCATTGCAAGGCCACAACTTGTCACGTTACCAACCATTAACAACGTTGAACAAAACACGGGTCTCTCTCAGTTGTGTTCACAGAAACCGCTCTACCTTTCATCCACTGAGAACTTGGCATTGGTGAAGAGAAGGAGGGAGACTGAGTGCCAGGCCTATGAAGCCGATAGGTCACGGCCTCTGGAGATTAACATTGAGCTGCCGGGCGAAGAGGCGGCGCAGAGGTTCAAGATTGGGCTGTATTTTGCTACATGGTGGGCTTTGAATGTGGTGTTCAACATTTACAACAAGAAGGTTTTGAATGCTTTTCCTTACCCATGGCTCACCTCCACTTTGTCCCTTGCTGCTGGCTCCCTCATGATGTTAGTCTCCTGGGCCACCAGGGTTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAGGTTGCTGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCAGCTTTCAGTGTTCTTGTGTCAAGGTTCTTGCTCGGAGAAGCATTCCCAATGCCGGTATATCTGTCACTGCTGCCAATTATTGGTGGTTGTGCATTAGCTGCAGTGACTGAGCTCAATTTCAATATGATTGGCTTTATGGGGGCTATGATATCAAATTTGGCATTCGTCTTCCGCAATATATTCTCAAAGAAAGGGATGAAGGGAATGTCTGTTAGTGGAATGAACTACTATGCTTGTCTTTCCATAATGTCACTACTAATTCTCACACCTTTTGCCATTGCTGTTGAGGGCCCCAAGGTTTGGATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGGTAAGCACAATTTGTATTTGTATTTGTAATTTTTTGCTGTTAGTTTTTGAATTAGTTCAACATGATTTCTTATTTTTGTACTTTTTATTTCATGTTGCTGGCCAAATTAACTTCGTGTATCCTCTTTATGAATTTTTTTTATTGGCAGATGTGAGATGTTAGTTTTGTTAATTTTCATTAACAGGGAGGAGTAAATTCAGTCTTTTTTTCTTTTCCTTCTTCCTTAACCACCCACCCAACCTTATGTCTCCCTTTATAAAATGTTGTTAACTAATGGATTTTGATGTTTACAGGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTCAGCATTGGAAACACAATGAAGAGGATTTCGGTCATTGTCTCTTCCATCCTTATCTTTCACACGCCTGTTCAGCCCATCAATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGGTGCATTGTCGTCTCCTTCTAAATTGAGTTTGTTTTTTGTACTCCGAGATTCCTAAGTGAGAATCCTAAGGGACAACAAGCTTTGTGCACAGAAATTATTGTTTTTTGTTTGCTTTTTCTATCTATATCTATATTTATATCAAGTACATTAAGAGAAAGGATTATAGAACCTCCATATACACTATTCTTTAAAAAGTGCTGGATTTTGAAGCATTTAATCAGTGCAAACAAAGTCAAATAAGTCATACTAAGGCGTGCAACAGCCCCTAATATAGTTCAATTTGTTGAATGTACCTCTTCACATAAATTAGGCATTGTTACATTTTTACAGACCCAAAGAAAACTCACAAGTTGTAATATTGTGTTTTTCTCTCTTGAATATTCCAAAGAAAATTTTAAATTGTATCCATGAACAACAGAAATCACAACTAATGGTTTGCAAAGTGTGAGTGGCCGTATTATAAATGTTTAGTTTTTTTTCTACGGTTTTCTATTATTAAAACACTACTCAATTAGTGATACATGAATACATGACACATAATCATATATATAGATAGAACACAACTGACAAATTTCCATTGATTGTGTGAACAGGCTAAACAGTAAGGTGATAATTTTGAAGCTGTTAAGTAACACACGCGAACAATGACTCATGGCTGGAGCTCAAAGTGTCACTAATGAGGACTACGGCATTAATTAGCTAGTTTTGTTGTCAATAGGAATTTAAGTTTATTTCTTTTGGGCCATAGCAGGAGCATTTCTAATCACGTTTCGATCTGTGTAAATTAGCTTTAGAAGAATGGAATGCACTAAGCCGTACTTGATCTTTAGGATGTAGGTATATCAATTCTCGAAAAAAAAAATCGTTGTAAAGTCATGTAAATCAGTACTTATTATTTTATTGGTTTGTTACTTATTATTGTGCAGACTAACTTGAAAGCTCAATATTGATTATTAGACAGTCCAACATTGTTTGGTGACTTTGGTCAATGTTCAATTAGACCAAT

Coding sequences of Glyma15g11270

Limit To All Plant Sequences

>Glyma15g11270.1   sequence type=CDS   gene model=Glyma15g11270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTCTTCAATGAAGTGCACAGCCTCATCTCTCACATGTTCCGCTTTCTCAAACAGAAAGATTCCCATTGCAAGGCCACAACTTGTCACGTTACCAACCATTAACAACGTTGAACAAAACACGGGTCTCTCTCAGTTGTGTTCACAGAAACCGCTCTACCTTTCATCCACTGAGAACTTGGCATTGGTGAAGAGAAGGAGGGAGACTGAGTGCCAGGCCTATGAAGCCGATAGGTCACGGCCTCTGGAGATTAACATTGAGCTGCCGGGCGAAGAGGCGGCGCAGAGGTTCAAGATTGGGCTGTATTTTGCTACATGGTGGGCTTTGAATGTGGTGTTCAACATTTACAACAAGAAGGTTTTGAATGCTTTTCCTTACCCATGGCTCACCTCCACTTTGTCCCTTGCTGCTGGCTCCCTCATGATGTTAGTCTCCTGGGCCACCAGGGTTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAGGTTGCTGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCAGCTTTCAGTGTTCTTGTGTCAAGGTTCTTGCTCGGAGAAGCATTCCCAATGCCGGTATATCTGTCACTGCTGCCAATTATTGGTGGTTGTGCATTAGCTGCAGTGACTGAGCTCAATTTCAATATGATTGGCTTTATGGGGGCTATGATATCAAATTTGGCATTCGTCTTCCGCAATATATTCTCAAAGAAAGGGATGAAGGGAATGTCTGTTAGTGGAATGAACTACTATGCTTGTCTTTCCATAATGTCACTACTAATTCTCACACCTTTTGCCATTGCTGTTGAGGGCCCCAAGGTTTGGATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTCAGCATTGGAAACACAATGAAGAGGATTTCGGTCATTGTCTCTTCCATCCTTATCTTTCACACGCCTGTTCAGCCCATCAATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGGCTAAACAGTAA

>Glyma15g11270.2   sequence type=CDS   gene model=Glyma15g11270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTCTTCAATGAAGTGCACAGCCTCATCTCTCACATGTTCCGCTTTCTCAAACAGAAAGATTCCCATTGCAAGGCCACAACTTGTCACGTTACCAACCATTAACAACGTTGAACAAAACACGGGTCTCTCTCAGTTGTGTTCACAGAAACCGCTCTACCTTTCATCCACTGAGAACTTGGCATTGGTGAAGAGAAGGAGGGAGACTGAGTGCCAGGCCTATGAAGCCGATAGGTCACGGCCTCTGGAGATTAACATTGAGCTGCCGGGCGAAGAGGCGGCGCAGAGGTTCAAGATTGGGCTGTATTTTGCTACATGGTGGGCTTTGAATGTGGTGTTCAACATTTACAACAAGAAGGTTTTGAATGCTTTTCCTTACCCATGGCTCACCTCCACTTTGTCCCTTGCTGCTGGCTCCCTCATGATGTTAGTCTCCTGGGCCACCAGGGTTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAGGTTGCTGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCAGCTTTCAGTGTTCTTGTGTCAAGGTTCTTGCTCGGAGAAGCATTCCCAATGCCGGTATATCTGTCACTGCTGCCAATTATTGGTGGTTGTGCATTAGCTGCAGTGACTGAGCTCAATTTCAATATGATTGGCTTTATGGGGGCTATGATATCAAATTTGGCATTCGTCTTCCGCAATATATTCTCAAAGAAAGGGATGAAGGGAATGTCTGTTAGTGGAATGAACTACTATGCTTGTCTTTCCATAATGTCACTACTAATTCTCACACCTTTTGCCATTGCTGTTGAGGGCCCCAAGGTTTGGATTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGGTAA

Predicted protein sequences of Glyma15g11270

Limit To All Plant Sequences

>Glyma15g11270.1   sequence type=predicted peptide   gene model=Glyma15g11270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISSMKCTASSLTCSAFSNRKIPIARPQLVTLPTINNVEQNTGLSQLCSQKPLYLSSTENLALVKRRRETECQAYEADRSRPLEINIELPGEEAAQRFKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWATRVAEVPKVNLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPMPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSIMSLLILTPFAIAVEGPKVWIAGWQTAVSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPVQPINALGAAIAILGTFLYSQAKQ*

>Glyma15g11270.2   sequence type=predicted peptide   gene model=Glyma15g11270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISSMKCTASSLTCSAFSNRKIPIARPQLVTLPTINNVEQNTGLSQLCSQKPLYLSSTENLALVKRRRETECQAYEADRSRPLEINIELPGEEAAQRFKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLVSWATRVAEVPKVNLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPMPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSIMSLLILTPFAIAVEGPKVWIAGWQTAVSQIGPNFVW*

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