SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03220 | AT | Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433 | SoyBase | E_val: 5.00E-57 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004190 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity | SoyBase | N/A | ISS |
| KOG1339 | KOG | Aspartyl protease | JGI | ISS | |
| PTHR13683 | Panther | ASPARTYL PROTEASES | JGI | ISS | |
| PTHR13683:SF100 | Panther | BASIC 7S GLOBULIN-RELATED | JGI | ISS | |
| UniRef100_G8A053 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Basic 7S globulin n=1 Tax=Medicago truncatula RepID=G8A053_MEDTR | SoyBase | E_val: 3.00E-77 | ISS |
| UniRef100_I1MFE8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MFE8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g11140 not represented in the dataset |
Glyma15g11140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g104700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g11140.1 sequence type=CDS gene model=Glyma15g11140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACTCCTACTTGTGTCTTGTATTTCTGTGTACTTGTCTTCTTTGTTTCACCATCTTTGTCAGCATCAAATGAATTTCCTAAGACCGGATATATCTCCCTCCCCATTAACATAGATCCAACCACCCATCAGCACTTCACATCAATAGGCATAGGAACTCCACGACACAACATGAATTTAGCCATTGACATTTCAGGGAGCTACCTGTGGTACGACTGTGGTGGTAATTACAATTCCTCCTCTTACAATCCTGTCCTCTGGGACTCCCCACAATGCCCTGGACCCGAACCCTTCCAATCCAATTGCGATGCTGGTTTTCCCTTTAAGCCAGGCTGCACCAACAACACCTGTAATGTTGCCCTTGATAACCCCTTTGCTGACTTTGGTTTCGGCGGTGACTTGGGTCATGATTTCCTCTTCACTCCTCAGATCAAGTTGCCTCAAACCTTTTTTTCTGTTTGCTCAGAATCTTCTAGGTTCCCCCAGTTACCTATTCTTGTTGGCCTTCCCAAAGGCACCAAAGGGAGTCTAGGGCTTGCAAGGCAGTCACCATTCACATTACAATCTCAAATCTCTTCTTCCTTTAACAACGTTCCTCCCAAGTTCACTCTTTGTTTACCTTCTTCTGGTAAAAAGGGACATCTTTTCATTGGTGGGAGACCAACTTTCTCTACCCCTCTTTCCCAAATTGGATTTGATAGCCGTTATTCCAATTACGATTACTTCTTTCATCTCAACTCAATTCATATTAATCACAAACCTGTTCAATTTAACACTTCTGGTCTGTCCGTCGATTTAAACGACAACGTGGGCACTAAAATTAGCACCCTTCATCCTTTCACAGTGTTACACCCTCAAGTCTACCAGCCCTTTGTTAAAGCTTTTGTGAAGGCAGCAAAGACCAAAAACATGAAGAGAGTGAAAAAAGTGCACCCATTTGGGACATGCTACGATGCCACTACCGTTGGGGATCATAGAGAAGCTGTGCCAGCTATCGATCTAGTGTTGGAAGCAGAAGAATTAGGCCGCTTTGGGAAAGTGAGTTATGAGATATATGGCCACGATTCCTTGGTTGAAGTGAAAAAAGGTGTGCTGTGTTTGGCTTTTGTTAATGGAGGTATAAGGGCATTAGATGCTGTTCTTCTTGGTGCGCATCAACTCAAGGATAGGATTTTGGTGTTTGATGAGAGTACCTCAATTATAAGCTTTAGCTCCTCCCTTGTGCATCAAAATAAAACCTGCTTAGATCCAACTTCTCTTTAA
>Glyma15g11140.1 sequence type=predicted peptide gene model=Glyma15g11140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATPTCVLYFCVLVFFVSPSLSASNEFPKTGYISLPINIDPTTHQHFTSIGIGTPRHNMNLAIDISGSYLWYDCGGNYNSSSYNPVLWDSPQCPGPEPFQSNCDAGFPFKPGCTNNTCNVALDNPFADFGFGGDLGHDFLFTPQIKLPQTFFSVCSESSRFPQLPILVGLPKGTKGSLGLARQSPFTLQSQISSSFNNVPPKFTLCLPSSGKKGHLFIGGRPTFSTPLSQIGFDSRYSNYDYFFHLNSIHINHKPVQFNTSGLSVDLNDNVGTKISTLHPFTVLHPQVYQPFVKAFVKAAKTKNMKRVKKVHPFGTCYDATTVGDHREAVPAIDLVLEAEELGRFGKVSYEIYGHDSLVEVKKGVLCLAFVNGGIRALDAVLLGAHQLKDRILVFDESTSIISFSSSLVHQNKTCLDPTSL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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