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Report for Sequence Feature Glyma15g11090

Feature Type:gene_model
Chromosome:Gm15
Start:8118636
stop:8122298
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52210AT Annotation by Michelle Graham. TAIR10: GTP-binding protein 1 | chr5:21205567-21206840 FORWARD LENGTH=205 SoyBaseE_val: 3.00E-116ISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0007264GO-bp Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG0076 KOG GTP-binding ADP-ribosylation factor-like protein yARL3 JGI ISS
PTHR11711Panther ARF-RELATED JGI ISS
PTHR11711:SF80Panther SUBFAMILY NOT NAMED JGI ISS
PF00025PFAM ADP-ribosylation factor family JGI ISS
UniRef100_B9R9D6UniRef Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor, putative n=1 Tax=Ricinus communis RepID=B9R9D6_RICCO SoyBaseE_val: 6.00E-130ISS
UniRef100_I1MFE4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MFE4_SOYBN SoyBaseE_val: 5.00E-146ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g11090 not represented in the dataset

Glyma15g11090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g27940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g104200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g11090.1   sequence type=CDS   gene model=Glyma15g11090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCGTTGTTTTATGGACTATGGAAGTACTTGTTCAGCAAGATGGAGCTTCATGTACTCATTCTGGGTATTGACAAGGCTGGCAAAACGACTTTGCTGGAGAAGATGAAGTCGGTGTACTCAAATATAGAAGGCATTCCTCCTGATCGAATTATTCCAACAGTGGGATTGAACATTGGTCGCATTGAAGTGGCAAATAGTAAACTTGTGTTCTGGGACCTAGGAGGTCAGCCTGGTCTTCGCTCAATCTGGGAGAAATATTATGAAGAGGCACATGCTGTAATATTTGTTGTTGATGCTTCTTGTCCGTCACGCTTTGAAGATGCGAAGTCAGCACTGGAAAAGGTGCTTCGGCATGAGGATCTACAAGGAGCCCCTCTTTTGATATTAGCTAACAAGCAGGATATTCCTGAAGCAGTATCAGCTGATGAGCTTGCTCGATATTTGGATTTAAAGAAGCTGGATGAAAGAGTTTCCATGTTTGAAGCCGTGTCAGCGTACGATGGGATGGGGATTAGGGAAAGTGCAGAATGGTTGGTGGAGGTGATGGAGAGAAGCAAGAGGACTGAAATGTTAAGAGCGAGGGCAGGTGCAATGGGTCCAGGTCCCTAG

>Glyma15g11090.1   sequence type=predicted peptide   gene model=Glyma15g11090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSNIEGIPPDRIIPTVGLNIGRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRFEDAKSALEKVLRHEDLQGAPLLILANKQDIPEAVSADELARYLDLKKLDERVSMFEAVSAYDGMGIRESAEWLVEVMERSKRTEMLRARAGAMGPGP*







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