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Report for Sequence Feature Glyma15g11004

Feature Type:gene_model
Chromosome:Gm15
Start:8023438
stop:8029698
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G06180AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L34e superfamily protein | chr3:1871705-1873554 FORWARD LENGTH=241 SoyBaseE_val: 8.00E-61ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR10759Panther 60S RIBOSOMAL PROTEIN L34 JGI ISS
PTHR10759:SF3Panther STRUCTURAL CONSTITUENT OF RIBOSOME JGI ISS
UniRef100_B9RSR8UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L34, putative n=1 Tax=Ricinus communis RepID=B9RSR8_RICCO SoyBaseE_val: 4.00E-63ISS
UniRef100_I1MFD8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFD8_SOYBN SoyBaseE_val: 6.00E-138ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g11004 not represented in the dataset

Glyma15g11004 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g28020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g103200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g11004.1   sequence type=CDS   gene model=Glyma15g11004   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGAGGAGAAGGTGACATTGAGCATGAGCATGAGCATGAGCATGAGCATGAACAGAGGGATGATGGTTCACTGCAACAACAATAACAATGTCAACAACACTAATAATGTGTGCAACTGCAAGCACTCTCCCTCCGCCACCTTAGACCTTCTCATCCTCCTCCTAGTCCTCTTCTCCGGCGCGTTCCTCCTCTCCTCCTACCTCTGCTACATCTTCAACTCCCTCTCCCTCCTCCTCCCCTCGGTGCCGCTCTCCTACCTCCTCCCCTTCCTCCTCTTCTTCGCCCTCTCCCTCGCCACCGCCGACTTCTGCTGCGGCGCCCGATCCCGCCGCTGCCAGCGCCAGGGCTGCAAGGGCCTCAAGAAGGCCATGGAGTTCGATTTGCAGATTCAGCGCTTCGGCTCCTCCGTGCCTTCCTCCGCCGAAATCGATAAGCTCCCCTGGAAGGGCGGCACTGAGGCCAACCCCGATTACGACTGCCTCAGGTCCGAGCTGAGGAAGATGGCTCCCCCTAACGGCCGCGCGCTTCTTCTCTTCCGGGCCCCCTGCGGCTGCCCCGTCGCCAAACTCGAGGCCTCTGGTCCCAAAAAGGCCAAACGCCATAAGAGGACCCCACCCAGTGCGACTCTTAATGGAGGAGGAGATCATCGTTGA

>Glyma15g11004.1   sequence type=predicted peptide   gene model=Glyma15g11004   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQEEKVTLSMSMSMSMSMNRGMMVHCNNNNNVNNTNNVCNCKHSPSATLDLLILLLVLFSGAFLLSSYLCYIFNSLSLLLPSVPLSYLLPFLLFFALSLATADFCCGARSRRCQRQGCKGLKKAMEFDLQIQRFGSSVPSSAEIDKLPWKGGTEANPDYDCLRSELRKMAPPNGRALLLFRAPCGCPVAKLEASGPKKAKRHKRTPPSATLNGGGDHR*







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