Glyma15g10988 - SoyBase

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Report for Sequence Feature Glyma15g10988

Feature Type:	gene_model
Chromosome:	Gm15
Start:	8016548
stop:	8017283
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10988

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55230	AT	Annotation by Michelle Graham. TAIR10: Family of unknown function (DUF716) \| chr1:20602895-20603797 FORWARD LENGTH=300	SoyBase	E_val: 3.00E-19	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR16007	Panther	EPIDIDYMAL MEMBRANE PROTEIN E9-RELATED	JGI		ISS
PTHR16007:SF5	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_A2Q224	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proteinase inhibitor I4, serpin n=1 Tax=Medicago truncatula RepID=A2Q224_MEDTR	SoyBase	E_val: 8.00E-20	ISS
UniRef100_UPI000233B2E3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B2E3 related cluster n=1 Tax=unknown RepID=UPI000233B2E3	SoyBase	E_val: 9.00E-48	ISS

Expression Patterns of Glyma15g10988

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g10988 not represented in the dataset	Glyma15g10988 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10988

Paralog	Evidence	Comments
Glyma13g28040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10988 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g103000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10988

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10988

Limit To All Plant Sequences

>Glyma15g10988.1   sequence type=CDS   gene model=Glyma15g10988   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACTCTAGTGGGACATGTAGCTCCAGGTTTGGATTTCAGGCTAATAGGGCTATGGCACCTCTTCAACCACATCAAGCTCCACGCCCTAAATCCAACCTTCTACACTGCTCCACCATGGTTCCCAACCTCCAAAGACAAGTACCTTAAACTCTTCCTCATCATGGCAGCCTTAATTAATAGCCTCCATCTCCATGGAACTCTTCATTGGCCTAGGCCACCACTAGACCTTTGA

Predicted protein sequences of Glyma15g10988

Limit To All Plant Sequences

>Glyma15g10988.1   sequence type=predicted peptide   gene model=Glyma15g10988   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTLVGHVAPGLDFRLIGLWHLFNHIKLHALNPTFYTAPPWFPTSKDKYLKLFLIMAALINSLHLHGTLHWPRPPLDL*

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