Glyma15g10820 - SoyBase

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Report for Sequence Feature Glyma15g10820

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7877818
stop:	7879682
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15470	AT	Annotation by Michelle Graham. TAIR10: Bax inhibitor-1 family protein \| chr4:8843661-8845505 FORWARD LENGTH=256	SoyBase	E_val: 5.00E-114	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
KOG2322	KOG	N-methyl-D-aspartate receptor glutamate-binding subunit	JGI		ISS
PTHR23291	Panther	BAX INHIBITOR-RELATED	JGI		ISS
PTHR23291:SF9	Panther	GLUTAMATE-/ASPARTATE-BINDING PEPTIDE-RELATED	JGI		ISS
PF01027	PFAM	Uncharacterised protein family UPF0005	JGI		ISS
UniRef100_G7IKC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane BAX inhibitor motif-containing protein n=1 Tax=Medicago truncatula RepID=G7IKC7_MEDTR	SoyBase	E_val: 1.00E-132	ISS
UniRef100_I1MFB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFB5_SOYBN	SoyBase	E_val: 1.00E-175	ISS

Expression Patterns of Glyma15g10820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10820

Paralog	Evidence	Comments
Glyma13g28240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g101400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10820

Limit To All Plant Sequences

>Glyma15g10820.1   sequence type=CDS   gene model=Glyma15g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGAGCCGCAGCAGCTATACACTCGAGCGAAGACCGAGGAATTCGACCTCGAATCAGGGGAAACCCTCTACCCAGGGCTGAGCGTCGGCGAGAACCAGCTCCGATGGGGCTTCATCCGCAAGGTCTACGGCATCCTCTCCGCCCAGATCGTCCTCACCACCCTCGTCTCTGTCACCACCGTTTTCTATACTCCAATCAATGACCTCCTCAAGGGCAATTCCACCCTCCTCCTCATCCTCCTCTTCCTTCCTTTCATCTTTTTGATTCCCCTGTTGAAGTACCAGCAGAAGCATCCTCATAATTACATCTTGCTTGCACTCTTCACCGTGTCTATCAGCTCCACCGTCGGAGTCACTTGCGCCAACACCGACGGGAAAATTGTGCTTGAGGCCTTGATTTTGACCTCCGCTGTGGTTTCATCTCTTACCGGCTATGCCTTTTGGGCGTCCAAGAAGGGCAAGGATTTTAGCTTCCTTGGCCCAGTGTTGTTCACCTCCCTCTTTACTCTCATCCTCACTGGCATGATGCAGATGTTCTTCCCTCTTGGACCTACTGCCCATGCTATCTATGGTGCAATTGGTGCTATGATTTTCTCTGGCTATATTGTATACGACACTGACAACCTGATCAAGCGCTTCACTTATGATGAGTACATTGGAGCCTCCGTCACTCTTTATCTTGACATACTCAACCTCTTCCTTTCCATCTTGAGGATCCTCCGGGAAGCAAATAATTAG

Predicted protein sequences of Glyma15g10820

Limit To All Plant Sequences

>Glyma15g10820.1   sequence type=predicted peptide   gene model=Glyma15g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFEPQQLYTRAKTEEFDLESGETLYPGLSVGENQLRWGFIRKVYGILSAQIVLTTLVSVTTVFYTPINDLLKGNSTLLLILLFLPFIFLIPLLKYQQKHPHNYILLALFTVSISSTVGVTCANTDGKIVLEALILTSAVVSSLTGYAFWASKKGKDFSFLGPVLFTSLFTLILTGMMQMFFPLGPTAHAIYGAIGAMIFSGYIVYDTDNLIKRFTYDEYIGASVTLYLDILNLFLSILRILREANN*

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