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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma15g10801

Feature Type:gene_model
Chromosome:Gm15
Start:7868782
stop:7871508
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18940AT Annotation by Michelle Graham. TAIR10: Mo25 family protein | chr5:6325972-6328097 FORWARD LENGTH=345 SoyBaseE_val: 1.00E-46ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PTHR10182Panther MO25-RELATED JGI ISS
PF08569PFAM Mo25-like JGI ISS
UniRef100_B7FJS9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein n=1 Tax=Medicago truncatula RepID=B7FJS9_MEDTR SoyBaseE_val: 3.00E-41ISS
UniRef100_I1MFB3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MFB3_SOYBN SoyBaseE_val: 7.00E-67ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g10801 not represented in the dataset

Glyma15g10801 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g10801.1   sequence type=CDS   gene model=Glyma15g10801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCAGATTCAGATTTTGCCAAAACGAGCGTTTCCAGGTCGAGGTTGCATCAAGCGGCAGAAGAGCAGAAAAGAAAAGCAGATCCAATTGCGTAAGGTACGTTCCCAGTTCTTTGATCTATATGAGAAATTCTTGACATCTCCTAATTATGTCACAAGGAGGCAGTCTTTGAAGCTTCTCTCGGAATTTCTTTTGGAATCTCCTAATTCTCAGATAATGAAACAGTTCATCTTAGAAGTTCGATACTTGAAAGTCATGATGACATTGCTGAGGATTTTGTTGTGGAGAACTGGAGATGATTATGTATTTGTTTTGATCTTTTCTCACATGTTTATTCAGGTTTTCATTGCTAATCCTAATAAGCCTCGAGAAGTAAAAATTATTTTGTCGAAAAACCAGGAGAAGCCACTAGAATTGCTTCATAATCTGTCCCCAGGAAAAGGTTCAGAAGATGAACAATTTGAGGAGGGAAAGGAGTTTATCATCAAGGAAATTGAAAGACTATCGAGCTAA

>Glyma15g10801.1   sequence type=predicted peptide   gene model=Glyma15g10801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQIQILPKRAFPGRGCIKRQKSRKEKQIQLRKVRSQFFDLYEKFLTSPNYVTRRQSLKLLSEFLLESPNSQIMKQFILEVRYLKVMMTLLRILLWRTGDDYVFVLIFSHMFIQVFIANPNKPREVKIILSKNQEKPLELLHNLSPGKGSEDEQFEEGKEFIIKEIERLSS*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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