Glyma15g10780 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g10780

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7848994
stop:	7850046
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18930	AT	Annotation by Michelle Graham. TAIR10: Adenosylmethionine decarboxylase family protein \| chr5:6312172-6313215 REVERSE LENGTH=347	SoyBase	E_val: 2.00E-140	ISS
GO:0006596	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine biosynthetic process	SoyBase	N/A	ISS
GO:0006597	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermine biosynthetic process	SoyBase	N/A	ISS
GO:0008295	GO-bp	Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004014	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenosylmethionine decarboxylase activity	SoyBase	N/A	ISS
KOG0788	KOG	S-adenosylmethionine decarboxylase	JGI		ISS
PTHR11570	Panther	S-ADENOSYLMETHIONINE DECARBOXYLASE	JGI		ISS
PF01536	PFAM	Adenosylmethionine decarboxylase	JGI		ISS
UniRef100_G7IFP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Medicago truncatula RepID=G7IFP7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MFB1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MFB1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g10780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10780

Paralog	Evidence	Comments
Glyma13g28280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g101000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10780

Limit To All Plant Sequences

>Glyma15g10780.1   sequence type=CDS   gene model=Glyma15g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTCGCATTCTCAGGTTTCGAAGGCTTCGAGAAGCGGCTGGAGCTCCATTTCTTCGGTGATGACCCAACCATCCTCCAACTGGGCCTCAGAAAACTCTCCTTCGACTGCATACAACAAACCCTACAAGCAGTCCAATGCACTGTGGTTTCAGCCGTTGGAAACTCCTACTTGGACGCTTATGTGTTATCAGAATCAAGCCTCTTTGTGTACCCAACAAAGATTATCATCAAAACGTGTGGGACAACGCAGCTTCTCAAATCCATTACTCCCTTGATCTTCTACGCGCAGACCCACCTCGGCCTCACCCTCTCTTTGTGCCGCTACACCCGCGGAAGCTTCATCTTCCCCTTGTCACAACCCTTCCCCCATACCAGCTTCGAACACGAAGTTACCTACTTGGAAACAACCCTCCCTTCAGACCTGTGCTTCAGAAAAGCCTCCATTATGCCCTCAAAATCCTCCTCACACTCGTGGCACGTGTTCACCGCCACGAATATTCCTCATCACTCTCACGCGCCTTACAGCCAAAACCACGCTTACACCATGGAAATCTGCATGACCGACCTCGACCCCGTCCTCGCCCGGAAGTTTTTCCGCCGCCCCGGCGACGGAAAAACCGGTGACTCCGCGGGGAAGGAAATGACGGAGCTCACCGGAATCGGCGAGATTAACTCGCACGCGCTCGTGTGCGATTTTGCGTTCGACCCGTGCGGGTACTCCATGAACGGCATGGATGGGGAGTGGTACTCCACCATTCACGTGACGCCGGAAGACGGTTACAGCTATGCGAGTTTTGAATGCGTGGGGTCCATGTCCGATGACGTGGACATAATCCACGTGTTGAGGAAGGTGGTTCAGATATTCCGACCGGGGACGATGTCGGTTTCTACGACGTCGTCGTTGGGGAGCGAGGTGTGGAGAGAGGTAGCGGGTGCGGTGGAGCCCATGGGACTGAAGTTGAGAAGCTGCGCGATGGACCAGTTCCCGGATTCTGGGAGTGTTGTGTTTCAAACATTTACGCCGCTTCGCCGGAAAAGTGCACAGTAG

Predicted protein sequences of Glyma15g10780

Limit To All Plant Sequences

>Glyma15g10780.1   sequence type=predicted peptide   gene model=Glyma15g10780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFAFSGFEGFEKRLELHFFGDDPTILQLGLRKLSFDCIQQTLQAVQCTVVSAVGNSYLDAYVLSESSLFVYPTKIIIKTCGTTQLLKSITPLIFYAQTHLGLTLSLCRYTRGSFIFPLSQPFPHTSFEHEVTYLETTLPSDLCFRKASIMPSKSSSHSWHVFTATNIPHHSHAPYSQNHAYTMEICMTDLDPVLARKFFRRPGDGKTGDSAGKEMTELTGIGEINSHALVCDFAFDPCGYSMNGMDGEWYSTIHVTPEDGYSYASFECVGSMSDDVDIIHVLRKVVQIFRPGTMSVSTTSSLGSEVWREVAGAVEPMGLKLRSCAMDQFPDSGSVVFQTFTPLRRKSAQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain