Glyma15g10720 - SoyBase

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Report for Sequence Feature Glyma15g10720

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7788377
stop:	7790751
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21530	AT	Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein \| chr3:7582828-7584448 REVERSE LENGTH=458	SoyBase	E_val: 3.00E-170	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_B9RSW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, putative n=1 Tax=Ricinus communis RepID=B9RSW0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BD1F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BD1F related cluster n=1 Tax=unknown RepID=UPI000233BD1F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g10720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10720

Paralog	Evidence	Comments
Glyma13g28340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g100400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10720

Limit To All Plant Sequences

>Glyma15g10720.1   sequence type=CDS   gene model=Glyma15g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGTGTCATTAGAAGAAAACTCCGGCACCTTTATTCAAGGATATTGTGGCTACTATGGAAGCGCCCCAGGTCTAAAGTTGTTATCAAAAGGTTTAGAAAATTGAACTTTAAGGGTCACCATAAAGCAGAATTGTGTAAAAACAAATCTACAAGTGACCCAAATGGCCTCTTAGTTGAGTCTCAATCTGGAAGGGCTATTAGGATTGCTACATTCAATGTAGCAATGTTTTCACTTGCACCTGCTGTTTCAGAATTTAATGAATGGGTTGTCTCCAATCATGAGAATGGATCTAACAAGAAGAGTCTTCTTGCAAAGGGTGATTTTCCTAAGAGTATATTAAAGCAATCTCCATTGCATGCCTCTCTGGACAAGGCTCAGAGTCTTTCTGACTCCGAGATTCTGCCACGTTCGAATTTGAAGGTTTCTATCAATCTCCCTGACAATGAGATTTCATTGGCAAATAGTAGATTGCTTGCTTCAATAGAGAGCAAAGAGGGCACATCAGATACAATTATGGGAAATGTTTCTGGCAGGCATCAAGTTCCAGCAAGGTCTCCTGTGTGCTTTCCTTTCATTATGAATTACTGTGAGGGCACTGAGAGATTCACATGCAGCAGAAGCATCCTGGAAGTCCTGAGAGAGATTGATGCTGATGTGCTGGCCCTGCAGGATGTGAAGGCAGAGGAAGAGAAGAACATGAAGCCTCTTTCTGATTTGGCAGCTGCCTTGGGGATGAAATATGTGTTTGCTGAAAGTTGGGCTCCAGAATATGGAAATGCCATCTTGTCCAAATGGCCAATTAAGAAGTGGAGAGTTCAGAAGATTGCTGATGATGATGATTTCAGGAATGTTTTGAAGGCTACAGTTGATGTGCCCTGGGCAGGAGAAATAAATTTTCACTCTACTCAACTTGACCACTTAGATGAGAATTGGAGAATGAAGCAAGTACATGCAATAATTCGCTCCAATGACCCTCCTCATATCTTGGCAGGAGGTCTAAATTCTCTATATGGAGCAGATTACTCATCAGAGAGATGGACAGACATTTTTAAGTATTATGAGAAACTTGGAAAGCCTAGGCCAAGGTCAGAAGTGATGAACTTCGTGAAATCAAAAGGCTATGTTGATGCAAAGGATTATGCAGGAGAATGCGAGCCCATTGCAATCATTGCCAAAGGCCAAAATGTGCAGGGGACATGCAAGTATGGCACAAGAGTGGATTACATTTTGGCTTCCCCAAACTCACACTACAAATATGTACCAGGGTCCTACTCAGTCATTTCATCTAAAGGAACTTCTGATCACCATATAGTGAAAGTGGACATTATGAAAGTAAATGCATCTGCTCAGAAAAATGCCATTAGACAGTGCAGGAAACTAAAGAGGAAAGTTGTGAAAATAACACCACCATGTTCTGCAACAGGTGTAAGGGAATCAACCCCACCTCCCAAAATATTTGTGCCATAA

Predicted protein sequences of Glyma15g10720

Limit To All Plant Sequences

>Glyma15g10720.1   sequence type=predicted peptide   gene model=Glyma15g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGVIRRKLRHLYSRILWLLWKRPRSKVVIKRFRKLNFKGHHKAELCKNKSTSDPNGLLVESQSGRAIRIATFNVAMFSLAPAVSEFNEWVVSNHENGSNKKSLLAKGDFPKSILKQSPLHASLDKAQSLSDSEILPRSNLKVSINLPDNEISLANSRLLASIESKEGTSDTIMGNVSGRHQVPARSPVCFPFIMNYCEGTERFTCSRSILEVLREIDADVLALQDVKAEEEKNMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKKWRVQKIADDDDFRNVLKATVDVPWAGEINFHSTQLDHLDENWRMKQVHAIIRSNDPPHILAGGLNSLYGADYSSERWTDIFKYYEKLGKPRPRSEVMNFVKSKGYVDAKDYAGECEPIAIIAKGQNVQGTCKYGTRVDYILASPNSHYKYVPGSYSVISSKGTSDHHIVKVDIMKVNASAQKNAIRQCRKLKRKVVKITPPCSATGVRESTPPPKIFVP*

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