SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15545 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8875932-8877567 FORWARD LENGTH=337 | SoyBase | E_val: 3.00E-127 | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| UniRef100_I1MFA1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MFA1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q93W28 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT4g15540/dl3810w n=1 Tax=Arabidopsis thaliana RepID=Q93W28_ARATH | SoyBase | E_val: 1.00E-124 | ISS |
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Glyma15g10700 not represented in the dataset |
Glyma15g10700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g100200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g10700.1 sequence type=CDS gene model=Glyma15g10700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGGTGAGTGAATCGAGTGGTTCGAAGGTGGATCTTCCGGAGGAGTTGCTAAATGTTCTACCGTCCGATCCTTACGAGCAGCTCGATGTGGCCCGCAAGATCACCTCCGTTGCGCTGTCGACACGTGTCGACGCGCTCCAATCAGAGTCGTCCGCTCTACGCGCCGAACTCGCCGATAGGAACCGGCTCATCGCCGAGCTCCAGTCTCAGGTGGAGTCCATCGACGCCGCTCTCTCCGAAGCCGCCGATAAGCTAGCCCGAGCCGACCAAGACAAGGAGAATTTGCTGAAGGAGAACGCTTCGCTTTCCAACACAGTGAGAAAGCTCACCAGAGATGTCTCCAAGTTGGAGACTTTCAGAAAGACGCTTATGAAATCACTTCGCGAGGATGAAGATACTTCTGAAGGAACGCCGGACACTGCAGCTAAGTTACACAGTCAAGCAAGTTTCACTTCCACATCGCAATTTGGAGATGATGATGCATCTTCAACGCTTTCTTCTAGAACATCTTCGATGCGAATAAACACTTCTGATATGGGAAATTATTTAGCAGAGGATCGTGAGTCTGATGGCTCAAAATCTCGAGCATCACATAATCTCCTCTTAGCATCTCAAACTAGCACCCCTCGAATTACTCCCCCTGGTTCCCCTCCTAGTATGTCTGCATTGGTATCCCCAACAAGAACATCATCTAAGCCTGTGTCTCCAAGGCGCCATGCAATTTCCTTTTCAACCTCAAGAGGAATGTTTGATGATAGGTCTTCAGTAGGGTCACAAACTGGACGAACACGCGTGGATGGAAAAGAGTTTTTTCGCCAAGTTAGGAGTCGTTTATCTTATGAGCAGTTTGGTGCATTTTTGGCAAATGTTAAGGAACTGAATTCTCATAAACAAACTAAAGAGGAAACACTACAGAAAGCTAATGAGTTATTTGGGCCTGAAAACAAGGACCTCTATACTATATTTGAGGGACTGATAACGCGCAATGTCCATTAG
>Glyma15g10700.1 sequence type=predicted peptide gene model=Glyma15g10700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVSESSGSKVDLPEELLNVLPSDPYEQLDVARKITSVALSTRVDALQSESSALRAELADRNRLIAELQSQVESIDAALSEAADKLARADQDKENLLKENASLSNTVRKLTRDVSKLETFRKTLMKSLREDEDTSEGTPDTAAKLHSQASFTSTSQFGDDDASSTLSSRTSSMRINTSDMGNYLAEDRESDGSKSRASHNLLLASQTSTPRITPPGSPPSMSALVSPTRTSSKPVSPRRHAISFSTSRGMFDDRSSVGSQTGRTRVDGKEFFRQVRSRLSYEQFGAFLANVKELNSHKQTKEETLQKANELFGPENKDLYTIFEGLITRNVH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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