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Report for Sequence Feature Glyma15g10660

Feature Type:gene_model
Chromosome:Gm15
Start:7744867
stop:7747497
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g10660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G21510AT Annotation by Michelle Graham. TAIR10: histidine-containing phosphotransmitter 1 | chr3:7578432-7579537 REVERSE LENGTH=154 SoyBaseE_val: 1.00E-71ISS
GO:0000041GO-bp Annotation by Michelle Graham. GO Biological Process: transition metal ion transport SoyBaseN/AISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0009553GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac development SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0015698GO-bp Annotation by Michelle Graham. GO Biological Process: inorganic anion transport SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0031537GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process SoyBaseN/AISS
GO:0048831GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of shoot development SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0080036GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0009927GO-mf Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity SoyBaseN/AISS
GO:0043424GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding SoyBaseN/AISS
KOG4747 KOG Two-component phosphorelay intermediate involved in MAP kinase cascade regulation JGI ISS
PF01627PFAM Hpt domain JGI ISS
UniRef100_B9RSW5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histidine-containing phosphotransfer protein, putative n=1 Tax=Ricinus communis RepID=B9RSW5_RICCO SoyBaseE_val: 1.00E-83ISS
UniRef100_C6SZQ5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SZQ5_SOYBN SoyBaseE_val: 7.00E-109ISS

Proteins Associated with Glyma15g10660
LocusGene SymbolProtein Name
HP01 Root Preferential, Phosphotransfer Protein

Expression Patterns of Glyma15g10660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10660
ParalogEvidenceComments
Glyma13g28390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g099800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g10660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g10660
>Glyma15g10660.6   sequence type=transcript   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGCGGGAATGAGTAATGTTCAACTAATAGCTATAAATAAGAGAGAGAAGTGGTAGTGGGGTCCGTAATAGTGCAAGAAAAATAATTTGCTTCTCTCTCTGTCTTTCTCACAAGACAACAGAGGAACACTCCCAAACAAACCATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGATGGGTGGGTTTGTAGAGATGCTTGTATTATGATCCTCTTCTTTGTTAAAGATTATCCTTTATCTTATTTAGTCCATGGTGAATGTATGGGTTTTTATGAAGATAGAAGTTTTCCATCCAATGTACCTTTTTCTTCACCAAAAAGCTCTTCATAATTTGTAATCTTTTGCATGCTTTACTGAAGGATGATAGTAGCACCATTAATTGAACTTTCCTCTTTTATCTCTCTTCCAAACAAGGAAGAAAATTAGTGGTGACAACACAATACAATCCTTTGAACACCAAATACTCTAAATGAACATCTGAATAATAAATGTACAACAATGATACATGTGAATACCATAGCATTATAAAAC

>Glyma15g10660.7   sequence type=transcript   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGCGGGAATGAGTAATGTTCAACTAATAGCTATAAATAAGAGAGAGAAGTGGTAGTGGGGTCCGTAATAGTGCAAGAAAAATAATTTGCTTCTCTCTCTGTCTTTCTCACAAGAGGAACACTCCCAAACAAACCATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGATGGGTGGGTTTGTAGAGATGCTTGTATTATGATCCTCTTCTTTGTTAAAGATTATCCTTTATCTTATTTAGTCCATGGTGAATGTATGGGTTTTTATGAAGATAGAAGTTTTCCATCCAATGTACCTTTTTCTTCACCAAAAAGCTCTTCATAATTTGTAATCTTTTGCATGCTTTACTGAAGGATGATAGTAGCACCATTAATTGAACTTTCCTCTTTTATCTCTCTTCCAAACAAGGAAGAAAATTAGTGGTGACAACACAATACAATCCTTTGAACACCAAATACTCTAAATGAACATCTGAATAATAAATGTACAACAATGATACATGTGAATACCATAGCATTATAAAAC

>Glyma15g10660.8   sequence type=transcript   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGCGGGAATGAGTAATGTTCAACTAATAGCTATAAATAAGAGAGAGAAGTGGTAGTGGGGTCCGTAATAGTGCAAGAAAAATAATTTGCTTCTCTCTCTGTCTTTCTCACAAGACAACAGAGGAACACTCCCAAACAAACCATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGGTAATTAGATAAAAAAAAAACTTAAGTTGAATAACATTCTATTACATTTTGGATTTGAAATTTATATTTATTTTATGGATACTCGTTGCAGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGATGGGTGGGTTTGTAGAGATGCTTGTATTATGATCCTCTTCTTTGTTAAAGATTATCCTTTATCTTATTTAGTCCATGGTGAATGTATGGGTTTTTATGAAGATAGAAGTTTTCCATCCAATGTACCTTTTTCTTCACCAAAAAGCTCTTCATAATTTGTAATCTTTTGCATGCTTTACTGAAGGATGATAGTAGCACCATTAATTGAACTTTCCTCTTTTATCTCTCTTCCAAACAAGGAAGAAAATTAGTGGTGACAACACAATACAATCCTTTGAACACCAAATACTCTAAATGAACATCTGAATAATAAATGTACAACAATGATACATGTGAATACCATAGCATTATAAAAC

>Glyma15g10660.9   sequence type=transcript   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCACCACTGTCTTCTTATGTTGTTTTGTGTGACAGACAACAGAGGAACACTCCCAAACAAACCATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGAGTTGTTAATCTTTAGACAAGTTGTTTAATGGTCTTGGCCTGAAGAATAAGTGAAAAAGTTTGAATGTCTAAGCAAATTGAGCAGAAAGTGCTAGTTTGGGTAATTTCATGGTCTGATCATGGAAAGTTTCTGATTACTACAGGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGATGGGTGGGTTTGTAGAGATGCTTGTATTATGATCCTCTTCTTTGTTAAAGATTATCCTTTATCTTATTTAGTCCATGGTGAATGTATGGGTTTTTATGAAGATAGAAGTTTTCCATCCAATGTACCTTTTTCTTCACCAAAAAGCTCTTCATAATTTGTAATCTTTTGCATGCTTTACTGAAGGATGATAGTAGCACCATTAATTGAACTTTCCTCTTTTATCTCTCTTCCAAACAAGGAAGAAAATTAGTGGTGACAACACAATACAATCCTTTGAACACCAAATACTCTAAATGAACATCTGAATAATAAATGTACAACAATGATACATGTGAATACCATAGCATTATAAAAC
Coding sequences of Glyma15g10660
>Glyma15g10660.2   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGA

>Glyma15g10660.6   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGA

>Glyma15g10660.7   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGA

>Glyma15g10660.8   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGGTAATTAGATAA

>Glyma15g10660.9   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGA
Predicted protein sequences of Glyma15g10660
>Glyma15g10660.2   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACVRCLQQVKQEYCLVKNKLETMFRLEQQIVAAGGSIPTELSFSG*

>Glyma15g10660.6   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACVRCLQQVKQEYCLVKNKLETMFRLEQQIVAAGGSIPTELSFSG*

>Glyma15g10660.7   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACVRCLQQVKQEYCLVKNKLETMFRLEQQIVAAGGSIPTELSFSG*

>Glyma15g10660.8   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACVRCLQQVKQEYCLVKNKLETMFRVIR*

>Glyma15g10660.9   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDA*






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