Glyma15g10660 - SoyBase

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Report for Sequence Feature Glyma15g10660

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7744867
stop:	7747497
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21510	AT	Annotation by Michelle Graham. TAIR10: histidine-containing phosphotransmitter 1 \| chr3:7578432-7579537 REVERSE LENGTH=154	SoyBase	E_val: 1.00E-71	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0010029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of seed germination	SoyBase	N/A	ISS
GO:0015698	GO-bp	Annotation by Michelle Graham. GO Biological Process: inorganic anion transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0031537	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process	SoyBase	N/A	ISS
GO:0048831	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of shoot development	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0080036	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0009927	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity	SoyBase	N/A	ISS
GO:0043424	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding	SoyBase	N/A	ISS
KOG4747	KOG	Two-component phosphorelay intermediate involved in MAP kinase cascade regulation	JGI		ISS
PF01627	PFAM	Hpt domain	JGI		ISS
UniRef100_B9RSW5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histidine-containing phosphotransfer protein, putative n=1 Tax=Ricinus communis RepID=B9RSW5_RICCO	SoyBase	E_val: 1.00E-83	ISS
UniRef100_C6SZQ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SZQ5_SOYBN	SoyBase	E_val: 7.00E-109	ISS

Proteins Associated with Glyma15g10660

Locus	Gene Symbol	Protein Name
	HP01	Root Preferential, Phosphotransfer Protein

Expression Patterns of Glyma15g10660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g10660 not represented in the dataset	Glyma15g10660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10660

Paralog	Evidence	Comments
Glyma13g28390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g099800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g10660

Limit To All Plant Sequences

>Glyma15g10660.6   sequence type=transcript   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGCGGGAATGAGTAATGTTCAACTAATAGCTATAAATAAGAGAGAGAAGTGGTAGTGGGGTCCGTAATAGTGCAAGAAAAATAATTTGCTTCTCTCTCTGTCTTTCTCACAAGACAACAGAGGAACACTCCCAAACAAACCATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGATGGGTGGGTTTGTAGAGATGCTTGTATTATGATCCTCTTCTTTGTTAAAGATTATCCTTTATCTTATTTAGTCCATGGTGAATGTATGGGTTTTTATGAAGATAGAAGTTTTCCATCCAATGTACCTTTTTCTTCACCAAAAAGCTCTTCATAATTTGTAATCTTTTGCATGCTTTACTGAAGGATGATAGTAGCACCATTAATTGAACTTTCCTCTTTTATCTCTCTTCCAAACAAGGAAGAAAATTAGTGGTGACAACACAATACAATCCTTTGAACACCAAATACTCTAAATGAACATCTGAATAATAAATGTACAACAATGATACATGTGAATACCATAGCATTATAAAAC

>Glyma15g10660.7   sequence type=transcript   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGCGGGAATGAGTAATGTTCAACTAATAGCTATAAATAAGAGAGAGAAGTGGTAGTGGGGTCCGTAATAGTGCAAGAAAAATAATTTGCTTCTCTCTCTGTCTTTCTCACAAGAGGAACACTCCCAAACAAACCATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGATGGGTGGGTTTGTAGAGATGCTTGTATTATGATCCTCTTCTTTGTTAAAGATTATCCTTTATCTTATTTAGTCCATGGTGAATGTATGGGTTTTTATGAAGATAGAAGTTTTCCATCCAATGTACCTTTTTCTTCACCAAAAAGCTCTTCATAATTTGTAATCTTTTGCATGCTTTACTGAAGGATGATAGTAGCACCATTAATTGAACTTTCCTCTTTTATCTCTCTTCCAAACAAGGAAGAAAATTAGTGGTGACAACACAATACAATCCTTTGAACACCAAATACTCTAAATGAACATCTGAATAATAAATGTACAACAATGATACATGTGAATACCATAGCATTATAAAAC

>Glyma15g10660.8   sequence type=transcript   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGCGGGAATGAGTAATGTTCAACTAATAGCTATAAATAAGAGAGAGAAGTGGTAGTGGGGTCCGTAATAGTGCAAGAAAAATAATTTGCTTCTCTCTCTGTCTTTCTCACAAGACAACAGAGGAACACTCCCAAACAAACCATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGGTAATTAGATAAAAAAAAAACTTAAGTTGAATAACATTCTATTACATTTTGGATTTGAAATTTATATTTATTTTATGGATACTCGTTGCAGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGATGGGTGGGTTTGTAGAGATGCTTGTATTATGATCCTCTTCTTTGTTAAAGATTATCCTTTATCTTATTTAGTCCATGGTGAATGTATGGGTTTTTATGAAGATAGAAGTTTTCCATCCAATGTACCTTTTTCTTCACCAAAAAGCTCTTCATAATTTGTAATCTTTTGCATGCTTTACTGAAGGATGATAGTAGCACCATTAATTGAACTTTCCTCTTTTATCTCTCTTCCAAACAAGGAAGAAAATTAGTGGTGACAACACAATACAATCCTTTGAACACCAAATACTCTAAATGAACATCTGAATAATAAATGTACAACAATGATACATGTGAATACCATAGCATTATAAAAC

>Glyma15g10660.9   sequence type=transcript   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCACCACTGTCTTCTTATGTTGTTTTGTGTGACAGACAACAGAGGAACACTCCCAAACAAACCATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGAGTTGTTAATCTTTAGACAAGTTGTTTAATGGTCTTGGCCTGAAGAATAAGTGAAAAAGTTTGAATGTCTAAGCAAATTGAGCAGAAAGTGCTAGTTTGGGTAATTTCATGGTCTGATCATGGAAAGTTTCTGATTACTACAGGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGATGGGTGGGTTTGTAGAGATGCTTGTATTATGATCCTCTTCTTTGTTAAAGATTATCCTTTATCTTATTTAGTCCATGGTGAATGTATGGGTTTTTATGAAGATAGAAGTTTTCCATCCAATGTACCTTTTTCTTCACCAAAAAGCTCTTCATAATTTGTAATCTTTTGCATGCTTTACTGAAGGATGATAGTAGCACCATTAATTGAACTTTCCTCTTTTATCTCTCTTCCAAACAAGGAAGAAAATTAGTGGTGACAACACAATACAATCCTTTGAACACCAAATACTCTAAATGAACATCTGAATAATAAATGTACAACAATGATACATGTGAATACCATAGCATTATAAAAC

Coding sequences of Glyma15g10660

Limit To All Plant Sequences

>Glyma15g10660.2   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGA

>Glyma15g10660.6   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGA

>Glyma15g10660.7   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGCTTGAGCAACAGATTGTGGCAGCTGGTGGGTCAATCCCTACGGAACTGAGTTTCAGTGGATGA

>Glyma15g10660.8   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGCGTCAGATGTCTGCAACAAGTGAAACAAGAGTACTGCCTTGTCAAGAATAAGCTTGAAACAATGTTCAGGGTAATTAGATAA

>Glyma15g10660.9   sequence type=CDS   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGGGTCAGATGCAGAGACAGTGGATCGACTACACCAAATCCCTCTTCCTCGAGGGCTTCCTGGATGGTCAGTTTCTGCAACTTCAGCAGCTTCAGGATGAGAACAACCCTGACTTTGTGGTCGAAGTTGTCTCTCTCTTCTTTGAAGATTCTGAAAGGCTTCTCAAAGATCTCACCTTTGCCCTAGATCAGAATGGCGTTGACTTCAAAAAAGTTGATGCTCATGTGCACCAGTTAAAGGGTAGCAGTTCAAGCATAGGTGCACAAAGGGTGAAAAATGCCTGCATTGCTTTCCGCAACTTCTGTGAGGAGCAGAACACAGATGCGTGA

Predicted protein sequences of Glyma15g10660

Limit To All Plant Sequences

>Glyma15g10660.2   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACVRCLQQVKQEYCLVKNKLETMFRLEQQIVAAGGSIPTELSFSG*

>Glyma15g10660.6   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACVRCLQQVKQEYCLVKNKLETMFRLEQQIVAAGGSIPTELSFSG*

>Glyma15g10660.7   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACVRCLQQVKQEYCLVKNKLETMFRLEQQIVAAGGSIPTELSFSG*

>Glyma15g10660.8   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDACVRCLQQVKQEYCLVKNKLETMFRVIR*

>Glyma15g10660.9   sequence type=predicted peptide   gene model=Glyma15g10660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVGQMQRQWIDYTKSLFLEGFLDGQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLKDLTFALDQNGVDFKKVDAHVHQLKGSSSSIGAQRVKNACIAFRNFCEEQNTDA*

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