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Report for Sequence Feature Glyma15g10650

Feature Type:gene_model
Chromosome:Gm15
Start:7735812
stop:7742100
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G03020AT Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr4:1331704-1334472 REVERSE LENGTH=493 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
KOG0266 KOG WD40 repeat-containing protein JGI ISS
PTHR19847Panther WD40 REPEAT PROTEIN JGI ISS
PTHR19847:SF3Panther LEC14B-RELATED JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
UniRef100_G7IFM0UniRef Annotation by Michelle Graham. Most informative UniRef hit: LEC14B-like protein n=2 Tax=Medicago truncatula RepID=G7IFM0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MF93UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF93_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g28430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g099700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g10650.4   sequence type=transcript   gene model=Glyma15g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCACCTTCTATGTGTGTGTACGTATGCAAATTGAGAAGAAACCAAGCAAAGCCAAGGAAACGAAAGGGGCTTTGACATTTCCATTTTTCCAATATTTAACATTCTTTATTCTTTCCAATTTTCATCACAAACACACACACACTACAGCACCAAAAACCGAAGCAAAGCAAGCAAAGCAAGCCAATCAAGACTCACCTTCGTGTTCCAATCAGAGGATATAGAGAGAGAATTATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAGTTCATGCTCTTTGTACATATGTGTCTGGATCCATACTATATTTTGCTAGTTACATGGGATTCATGTCTCTTTCTGTTTACTTCTTCTATTTTCCTACTTACAGAAAGGGTCCCAAAAAAAAATGTTACATTGATTTATACCTTGTTCTTTACGTTTTGTAATCCTATCATGGATGAACATAAAGCCTTGGTTAATGCACAATGTTGTCCCCTATTAAACGAGCCCAATTCCTCTCTGGTCTATTATATCTTCAAAACTTTGGGCTTTGAAGTTTGCATTGATGATGAAGTTTCCAAGAGGGGTGAGATTTCCTAGATGAACAATGAAGG

>Glyma15g10650.5   sequence type=transcript   gene model=Glyma15g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCACAAACACACACACACTACAGCACCAAAAACCGAAGCAAAGCAAGCAAAGCAAGCCAATCAAGACTCACCTTCGTGTTCCAATCAGAGAGAGAGAATTATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAGTTCATGCTCTTTGTACATATGTGTCTGGATCCATACTATATTTTGCTAGTTACATGGGATTCATGTCTCTTTCTGTTTACTTCTTCTATTTTCCTACTTACAGAAAGGGTCCCAAAAAAAAATGTTACATTGATTTATACCTTGTTCTTTACGTTTTGTAATCCTATCATGGATGAACATAAAGCCTTGGTTAATGCACAATGTTGTCCCCTATTAAACGAGCCCAA

>Glyma15g10650.3   sequence type=CDS   gene model=Glyma15g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAG

>Glyma15g10650.4   sequence type=CDS   gene model=Glyma15g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAG

>Glyma15g10650.5   sequence type=CDS   gene model=Glyma15g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAG

>Glyma15g10650.3   sequence type=predicted peptide   gene model=Glyma15g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWLNKNKSTCSDGSANNESSSSGIVGERDNHLDHEIAQLTKLRSSPHELLGRVVPGKMRLPASTVRMLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVDRMKSRAYVSQFSADGSLLIAGFQGSHIRIYDVDQGWKVKKDISARKLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTTESIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRIPAHQSDVNTVCFADESGHLIFSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSRGDGRYLISNGKDQTTKLWDIRKMSSNAINLGLGDDEWDYRWMDYPEYARNLKHPHDQSLATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRDCSWHPYYPMMITSAWDGDVVRWEFPGSDEAPASPNKREGRIHRRNLLYL*

>Glyma15g10650.4   sequence type=predicted peptide   gene model=Glyma15g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWLNKNKSTCSDGSANNESSSSGIVGERDNHLDHEIAQLTKLRSSPHELLGRVVPGKMRLPASTVRMLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVDRMKSRAYVSQFSADGSLLIAGFQGSHIRIYDVDQGWKVKKDISARKLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTTESIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRIPAHQSDVNTVCFADESGHLIFSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSRGDGRYLISNGKDQTTKLWDIRKMSSNAINLGLGDDEWDYRWMDYPEYARNLKHPHDQSLATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRDCSWHPYYPMMITSAWDGDVVRWEFPGSDEAPASPNKREGRIHRRNLLYL*

>Glyma15g10650.5   sequence type=predicted peptide   gene model=Glyma15g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWLNKNKSTCSDGSANNESSSSGIVGERDNHLDHEIAQLTKLRSSPHELLGRVVPGKMRLPASTVRMLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVDRMKSRAYVSQFSADGSLLIAGFQGSHIRIYDVDQGWKVKKDISARKLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTTESIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRIPAHQSDVNTVCFADESGHLIFSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSRGDGRYLISNGKDQTTKLWDIRKMSSNAINLGLGDDEWDYRWMDYPEYARNLKHPHDQSLATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRDCSWHPYYPMMITSAWDGDVVRWEFPGSDEAPASPNKREGRIHRRNLLYL*







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