Report for Sequence Feature Glyma15g10650
Feature Type: gene_model
Chromosome: Gm15
Start: 7735812
stop: 7742100
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g10650
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G03020 AT
Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr4:1331704-1334472 REVERSE LENGTH=493
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0080008 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
KOG0266
KOG
WD40 repeat-containing protein
JGI ISS
PTHR19847 Panther
WD40 REPEAT PROTEIN
JGI ISS
PTHR19847:SF3 Panther
LEC14B-RELATED
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
UniRef100_G7IFM0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LEC14B-like protein n=2 Tax=Medicago truncatula RepID=G7IFM0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MF93 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF93_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g10650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g10650
Paralog Evidence Comments
Glyma13g28430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g10650 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g099700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g10650
Transcripts of Glyma15g10650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g10650.4 sequence type=transcript gene model=Glyma15g10650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TGCACCTTCTATGTGTGTGTACGTATGCAAATTGAGAAGAAACCAAGCAAAGCCAAGGAAACGAAAGGGGCTTTGACATTTCCATTTTTCCAATATTTAACATTCTTTATTCTTTCCAATTTTCATCACAAACACACACACACTACAGCACCAAAAACCGAAGCAAAGCAAGCAAAGCAAGCCAATCAAGACTCACCTTCGTGTTCCAATCAGAGGATATAGAGAGAGAATTATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAGTTCATGCTCTTTGTACATATGTGTCTGGATCCATACTATATTTTGCTAGTTACATGGGATTCATGTCTCTTTCTGTTTACTTCTTCTATTTTCCTACTTACAGAAAGGGTCCCAAAAAAAAATGTTACATTGATTTATACCTTGTTCTTTACGTTTTGTAATCCTATCATGGATGAACATAAAGCCTTGGTTAATGCACAATGTTGTCCCCTATTAAACGAGCCCAATTCCTCTCTGGTCTATTATATCTTCAAAACTTTGGGCTTTGAAGTTTGCATTGATGATGAAGTTTCCAAGAGGGGTGAGATTTCCTAGATGAACAATGAAGG
>Glyma15g10650.5 sequence type=transcript gene model=Glyma15g10650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATCACAAACACACACACACTACAGCACCAAAAACCGAAGCAAAGCAAGCAAAGCAAGCCAATCAAGACTCACCTTCGTGTTCCAATCAGAGAGAGAGAATTATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAGTTCATGCTCTTTGTACATATGTGTCTGGATCCATACTATATTTTGCTAGTTACATGGGATTCATGTCTCTTTCTGTTTACTTCTTCTATTTTCCTACTTACAGAAAGGGTCCCAAAAAAAAATGTTACATTGATTTATACCTTGTTCTTTACGTTTTGTAATCCTATCATGGATGAACATAAAGCCTTGGTTAATGCACAATGTTGTCCCCTATTAAACGAGCCCAA
Coding sequences of Glyma15g10650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g10650.3 sequence type=CDS gene model=Glyma15g10650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAG
>Glyma15g10650.4 sequence type=CDS gene model=Glyma15g10650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAG
>Glyma15g10650.5 sequence type=CDS gene model=Glyma15g10650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTTGGTTGAATAAAAATAAAAGTACTTGTAGTGATGGTAGTGCCAATAATGAATCTTCTTCAAGTGGAATAGTTGGAGAAAGGGATAATCATCTTGATCATGAAATTGCACAGCTCACAAAACTTAGGTCAAGTCCTCATGAGCTTTTGGGTCGTGTTGTTCCTGGTAAGATGAGGTTACCTGCATCTACTGTGAGAATGCTGGTTGGTAGAGAAGGTAATTATTCTGGAAGAGGGAGATTTTCATCAGCAGATGGGTGTCATGTGTTAAGCCGCTATTTGCCTACCAAAGGTCCTTGGATTGTGGATCGGATGAAAAGTCGTGCCTATGTTTCACAGTTTTCTGCTGATGGTTCTCTTTTAATTGCTGGATTCCAGGGAAGCCACATCAGGATCTATGATGTTGACCAGGGCTGGAAAGTTAAAAAGGACATTTCTGCTAGAAAGTTACGGTGGACAGTTACTGATACATCTCTCTCGCCAGATCAACTCTATCTTGTTTATGCCAGTATGTCACCAATTATCCATATTGTTACCGTGGGATCTGGCACAACAGAATCAATAGCAAATGTTACAGAAATTCACTATGGATTAAATTTCTCTTCTGATAATGGTGATGATGAATTTGGAATTTTCTCTGTCAAATTTTCAACGGATGGGCGAGAGCTTGTGGCTGGAACTAGTGATTGCTCGATATGTGTATATGATCTTGGAGCAGATAAGCTGAGCCTTAGAATTCCTGCTCACCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGCCATCTAATATTTTCCGGTAGTGATGATAGTTTTATCAAGGTGTGGGATAGGCGTTGTTTTGTCGCCAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTGATAGCCGTGGGGATGGTCGATATTTAATTTCTAATGGAAAAGATCAAACTACCAAATTATGGGATATAAGGAAGATGTCTTCTAATGCCATAAATCTTGGCCTTGGAGATGATGAGTGGGACTATCGATGGATGGACTACCCTGAATATGCAAGAAATTTAAAGCATCCTCATGATCAATCGTTAGCAACATATAAAGGTCACTCAGTGTTGCGTACTTTAGTGCGCTGTTATTTCTCTCCTTCATATAGCACTGGTCAAAAGTACATTTACACCGGGTCTAGTGATTCGTCTGTTTACATATATGACCTGGTGAGTGGTGCACAAGTTGCAAAACTTGATCATCATGAGGCACCTGTAAGAGATTGTAGTTGGCACCCCTATTATCCAATGATGATCACTTCGGCTTGGGATGGTGATGTTGTTAGGTGGGAATTTCCTGGGAGTGATGAAGCCCCTGCTTCTCCAAATAAAAGAGAAGGTCGAATTCATAGGAGAAATTTGCTTTATCTATAG
Predicted protein sequences of Glyma15g10650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g10650.3 sequence type=predicted peptide gene model=Glyma15g10650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSWLNKNKSTCSDGSANNESSSSGIVGERDNHLDHEIAQLTKLRSSPHELLGRVVPGKMRLPASTVRMLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVDRMKSRAYVSQFSADGSLLIAGFQGSHIRIYDVDQGWKVKKDISARKLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTTESIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRIPAHQSDVNTVCFADESGHLIFSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSRGDGRYLISNGKDQTTKLWDIRKMSSNAINLGLGDDEWDYRWMDYPEYARNLKHPHDQSLATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRDCSWHPYYPMMITSAWDGDVVRWEFPGSDEAPASPNKREGRIHRRNLLYL*
>Glyma15g10650.4 sequence type=predicted peptide gene model=Glyma15g10650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSWLNKNKSTCSDGSANNESSSSGIVGERDNHLDHEIAQLTKLRSSPHELLGRVVPGKMRLPASTVRMLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVDRMKSRAYVSQFSADGSLLIAGFQGSHIRIYDVDQGWKVKKDISARKLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTTESIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRIPAHQSDVNTVCFADESGHLIFSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSRGDGRYLISNGKDQTTKLWDIRKMSSNAINLGLGDDEWDYRWMDYPEYARNLKHPHDQSLATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRDCSWHPYYPMMITSAWDGDVVRWEFPGSDEAPASPNKREGRIHRRNLLYL*
>Glyma15g10650.5 sequence type=predicted peptide gene model=Glyma15g10650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSWLNKNKSTCSDGSANNESSSSGIVGERDNHLDHEIAQLTKLRSSPHELLGRVVPGKMRLPASTVRMLVGREGNYSGRGRFSSADGCHVLSRYLPTKGPWIVDRMKSRAYVSQFSADGSLLIAGFQGSHIRIYDVDQGWKVKKDISARKLRWTVTDTSLSPDQLYLVYASMSPIIHIVTVGSGTTESIANVTEIHYGLNFSSDNGDDEFGIFSVKFSTDGRELVAGTSDCSICVYDLGADKLSLRIPAHQSDVNTVCFADESGHLIFSGSDDSFIKVWDRRCFVAKGQPAGILMGHLEGITFIDSRGDGRYLISNGKDQTTKLWDIRKMSSNAINLGLGDDEWDYRWMDYPEYARNLKHPHDQSLATYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSDSSVYIYDLVSGAQVAKLDHHEAPVRDCSWHPYYPMMITSAWDGDVVRWEFPGSDEAPASPNKREGRIHRRNLLYL*