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Report for Sequence Feature Glyma15g10620

Feature Type:gene_model
Chromosome:Gm15
Start:7708994
stop:7717091
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g10620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18830AT Annotation by Michelle Graham. TAIR10: squamosa promoter binding protein-like 7 | chr5:6276116-6280227 FORWARD LENGTH=801 SoyBaseE_val: 0ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0010638GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0055070GO-bp Annotation by Michelle Graham. GO Biological Process: copper ion homeostasis SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03110PFAM SBP domain JGI ISS
UniRef100_G7IFL1UniRef Annotation by Michelle Graham. Most informative UniRef hit: SQUAMOSA promoter binding protein n=1 Tax=Medicago truncatula RepID=G7IFL1_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MF88UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF88_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g10620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10620
ParalogEvidenceComments
Glyma13g28460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g099400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g10620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g10620
>Glyma15g10620.1   sequence type=CDS   gene model=Glyma15g10620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCCCAATCTCTCCCTCCTCCTCCCACCATGGACGACGCCCAAGACCCTTCCTCAATTTGGGACTTCTCTTACCTCCTCGACTTCAACCTCGACGACCAAGATGGTATTTTTACTAGCAGTAACTCTCTCCCTCTTCCCTTAAACGACGACGACGACGCCGCCGCTCCCGAGATTTCTCAAAACGACAGGGTCCGAAAGCGCGACCCGAGGATGACATGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTCGACGCGAAACTCGAGGACGAGGGTTTGCCCGTCAAGAAACGCGCCCGCACCGCGCGTGCATCTGCGTCCGCACGCTGCCAGGTCCCTGGCTGCGAAGCCGATATCTCAGAGCTCAAGGGGTATCACCGCCGACACAGGGTTTGCTTGCGCTGCGCTAATGCCGCCACCGTTATGCTCAACGACGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACGTTTTGTCGGATTTCGACGAAGGTAAACGGAGCTGCAGAAGGAAGTTGGAGCGGCATAATACCAGAAGGAGAAGAAAGCCTCCGGCGGATTCTGGAGGTGCTGCTCATAGTGAACTACTTCAACCTGTTGCTCAAAATGAGGAACACAATTATCATGTGGAAGCTGGAAAAGATTGTTCAAATTTGAGTACCGATGTCAATGACGTAGGAGTGTCTCCAGATCATGAAGATGAACCGGTCTCCATTCCCAGCTTGGCTCCAGATCATGAAGATGAACCGGTCTCCATTCCCAGCTTGGCTCCCGAAGCACAGAATATTAATAGTGACAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAATGCGGGTGAATAGTGGGAACACTTCTAATTCACCTTCGTATTGCAACAATAAGAATGCCTATTCGTCTGTGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAATATGCCTGTAGAATTGGAAGGATATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGTGGATAACTTTATTGAAAGACTCTTTGGAGTATGTGCACGATTTTGTTGCTCCTGGAAAGATGCTGTCTGGAAGAGGCACCGCATTAGTTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACAAAAGTTGAAGTTAACATGCTGGCACCGAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAGTTTCGGCTTCTTGTATCATTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTGCCATCTCCACATAGCTGGACTGAAGACAATATTTCGTGTGCTTTTGACAATCAGTTATACAAGATATATGTTCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTCATTCCTGTACTCATTGGGGACAAAGAAATTTGTACTGAAATGAAGACACTGCAGCAAAAATTAGATGTTTCTCTCCTTTCTAAACAATTCCAGTCTGCATCTGGTGGTTCTATCTGCAGCTCATGTGAAACTTTTGCACTTAGTCACACATCATCATCAGACTTCCTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGCCATTTGTTGGATTTTCTGATATGCAATGATTCAACAATTATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAGAGCGTGGAATCCAACAATGTTGTAATTAATAGGACAAGTGATGTTGACATAACGCAACTCCTGAATCACATACATAATGCTAGTAATGTCATATGTCAGAAACATCAGCAAAGTAGAAGTATAATTGTGCACTCTGAAATGGAAGGCTTTAAACTTGCTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGGGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACTTCTAATGACAAAACGGAAAGAATACCACTTTTGAAGAGGGATATTATAATGAGCGTGGAAGAGTTGCCTGAAAGATATGGGCGTCGATGTTTGGGCAGGGGATTCTTGACCTCTCGACCAGCTATTTTTGTGATTGTTTCGGTTGCTGTTTGTCTTGGGGTATGTGTTGCCGTCCTTCATCCTGGTAGGGTTAGTGAGTTAGCAGTATCGGTTAGAAGGTGCTTGTTTAACTATTAG
Predicted protein sequences of Glyma15g10620
>Glyma15g10620.1   sequence type=predicted peptide   gene model=Glyma15g10620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPQSLPPPPTMDDAQDPSSIWDFSYLLDFNLDDQDGIFTSSNSLPLPLNDDDDAAAPEISQNDRVRKRDPRMTCSNFLAGRVPCACPELDAKLEDEGLPVKKRARTARASASARCQVPGCEADISELKGYHRRHRVCLRCANAATVMLNDEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPADSGGAAHSELLQPVAQNEEHNYHVEAGKDCSNLSTDVNDVGVSPDHEDEPVSIPSLAPDHEDEPVSIPSLAPEAQNINSDSVVSLAVSGEMRVNSGNTSNSPSYCNNKNAYSSVCQTGRISFKLYDWNPAEFPRRLRHQIFQWLANMPVELEGYIRPGCTILTVFIAMPNIMWITLLKDSLEYVHDFVAPGKMLSGRGTALVHLNDMIFRVMKDGTSVTKVEVNMLAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHSWTEDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTLQQKLDVSLLSKQFQSASGGSICSSCETFALSHTSSSDFLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLICNDSTIILGKILPNLIILTESVESNNVVINRTSDVDITQLLNHIHNASNVICQKHQQSRSIIVHSEMEGFKLAQGCSQDNMLSVAINSQGILSRTDEKWGVLKSPTSNDKTERIPLLKRDIIMSVEELPERYGRRCLGRGFLTSRPAIFVIVSVAVCLGVCVAVLHPGRVSELAVSVRRCLFNY*






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