Glyma15g10581 - SoyBase

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Report for Sequence Feature Glyma15g10581

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7680443
stop:	7685716
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10581

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04700	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr5:1354240-1356754 REVERSE LENGTH=669	SoyBase	E_val: 2.00E-36	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7IFK1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A n=1 Tax=Medicago truncatula RepID=G7IFK1_MEDTR	SoyBase	E_val: 3.00E-115	ISS
UniRef100_UPI000233C5FC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C5FC related cluster n=1 Tax=unknown RepID=UPI000233C5FC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g10581

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g10581 not represented in the dataset	Glyma15g10581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10581

Paralog	Evidence	Comments
Glyma13g28510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10581 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma15g10581

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10581

Limit To All Plant Sequences

>Glyma15g10581.1   sequence type=CDS   gene model=Glyma15g10581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTGTTTAAGTATGCGGTGAAGGGGCAGTGGAGAGAGGCATTAGAGGCCTACAACAAAAACCTAGGAGCATTGGAGGCTAAGATCACAAGAGTGGAAGACACGGTGCTACATGTTGCTGTGTCTCTCAACATCTTGTGCTTGCAAAACTCAAAGGGAAACACTCCCCTTCACCTTGCGGCACAGCTTGGGAACGTGGAATTGTGCGACAACATGGCCAAAAGGAACCCCAAACTTGCAGCTGTTCACGGCAAGAGAGAGGCGTTCTTTTGTCTCCATGAAAACCAACCAAGACGTGATCATGAGGATGGCTCGTTGTTGGTTAGGAAAAGCAACGGGGATACCATTCTTCATTCTACCATCTCTAGTGAATACTTTGGTTTGGCGCTTCAAATAATTGAGATGTACCCAAACCTTGTAAATTCTATTCTTGCTGGGAAGCCTAATTGTTTCAAAAGCAGCATGCGAATGGAGTTACTTCAGCGTATTATTTACAATTGTTCGATTGTTGATGAGATTGAGAAAACAGATGATTTACGTTGTAATGAAGCAGACACAGCTCATCACTACCCAATGAACTATGAAACACGCGCGACCTTCTTATCATTGTTGAAGAGAAGCATAAATAGTAGTAATAATGATCAAAGTAAGGAGAAAGGAGGGTTTCAGAAAATAAGAAGAACGGATTCACCTATTTTGATTGCAACAAAGATGGGAGTGACCGAAATGGTTGAGAAGATTCTTGAGATAGACCCGGTGGCAATCCTTGACGTGGACGCTGATAACAAGAATGTTGTTCTTTCGGCCATAGAGAATAGGCAACCTCATGTTTACAGCCTGAGTTATAAACCTTGGCGTGTCCCTGGTGCTGCAATGCAATTGCAGTGGGAATACAAGTGGTATAAGCTTGTTAAGAACTCCATGCCACCAAATTTCTATGAACGTTACAACAAGAACGGGCAAACAGCAAAGCAGGTATTCAATAGTACACACGAAAAGCTCGCAAAAGAAGGTGGTAAATGGCTGACCAAAACCTCAGAATCATGCTCGTTGGTAGCAGCACTTGTTGCAACCGTTGCATTCACAACCTCAACAGCTATACCAGGTGGTCCGGATCAAAACACAGGCTATCCATTTTCCTCAGTCACAGCCCTCGTTTTATTTCTCTCGATACTCACATCTCGGTTCCAAGAAAAGGATTTTGCTATGGACTTGCCGAGAAAGCTTCTTCTGGAATTGACCACACTCTTCACATCTATAGCATCTGTCTTGGTGTCATTCTGTGCAGGGCATTTCTTCATCGTTGAAGACGAGCTGAAGTTGGCAGTTTATCCCATATATGCTGCTACGTGCTTGCCTGTGTCATTTTTTTGCATTTGTTCAACTTCCTCTTTACTTTGA

Predicted protein sequences of Glyma15g10581

Limit To All Plant Sequences

>Glyma15g10581.1   sequence type=predicted peptide   gene model=Glyma15g10581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SLFKYAVKGQWREALEAYNKNLGALEAKITRVEDTVLHVAVSLNILCLQNSKGNTPLHLAAQLGNVELCDNMAKRNPKLAAVHGKREAFFCLHENQPRRDHEDGSLLVRKSNGDTILHSTISSEYFGLALQIIEMYPNLVNSILAGKPNCFKSSMRMELLQRIIYNCSIVDEIEKTDDLRCNEADTAHHYPMNYETRATFLSLLKRSINSSNNDQSKEKGGFQKIRRTDSPILIATKMGVTEMVEKILEIDPVAILDVDADNKNVVLSAIENRQPHVYSLSYKPWRVPGAAMQLQWEYKWYKLVKNSMPPNFYERYNKNGQTAKQVFNSTHEKLAKEGGKWLTKTSESCSLVAALVATVAFTTSTAIPGGPDQNTGYPFSSVTALVLFLSILTSRFQEKDFAMDLPRKLLLELTTLFTSIASVLVSFCAGHFFIVEDELKLAVYPIYAATCLPVSFFCICSTSSLL*

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