Glyma15g10570 - SoyBase

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Report for Sequence Feature Glyma15g10570

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7672788
stop:	7679014
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21480	AT	Annotation by Michelle Graham. TAIR10: BRCT domain-containing DNA repair protein \| chr3:7567730-7571990 FORWARD LENGTH=1041	SoyBase	E_val: 5.00E-101	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR23196	Panther	PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN	JGI		ISS
UniRef100_G7ISL3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mediator of DNA damage checkpoint protein n=1 Tax=Medicago truncatula RepID=G7ISL3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BD18	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BD18 related cluster n=1 Tax=unknown RepID=UPI000233BD18	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g10570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10570

Paralog	Evidence	Comments
Glyma13g28550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g099000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10570

Limit To All Plant Sequences

>Glyma15g10570.2   sequence type=CDS   gene model=Glyma15g10570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCCGATTGATTCTACGGGCAATGATGATCGCAAAATCCACCAAGATTTTGACTTCGTCGACACTCAACCATTCGACACCGATGGCGAGGAGGACGATGTTTGTGGATACTTCGAGGACACAGTGCCTTTCGACGAAGACGACGACGTTTTGGAGACCGAAGCGGTGGACCTTGCCGGTGAAACTCAGGCATTGGATGATGGTGACGCTTTCGATGATGTCCTTTTGGAGACCGAAGCGGTGAACCTTGCCGAGGAAATTCAGGCATTGGATGACGGTGACACGCAGTTGCTGGAGGAAGAGTCGGATTCGGATAGAACGCAAGTTTTGGAGACTGTGGATGATGATGAGGTATCTGTCGACAATGTCAATGGTGAAGCCGCGGATAGCAAGAAGGTTGAATCCTCACAACAAAACAGCTATGGTTCTATGCCACCACGGTTTAATTTTCTCCATGCAGAATCTTTGCGGCAAGCTGCTCTAGCCTGCGACATGGATTTGAAAGAAACCCTGGATGTGACCAATTCTGTCAAGGGTACGAGTCAGTTTTGTCAGGAACCACTGGTTGTAAAGGATAAGGGAGAATCCTTTCTTAGATGTTCTGAGAAGGATGGGGGAGTTGATCAAGAAAACGAGCATGGGAAATACAGTGTGGAAGTTGGGGGGTTTAAGAGCAAAAGTATGTGCAAGGTTGCTAACTCAACAGTGAGAAAACTTTTCAATGATGTTTTACCTGTTGAAACAAACCAACCTTCTCTTAGCAGCAATGATTTTAATGAAGGAGACGACTTGGACAAGTTGCCTATTTACCATGGTGAATTGTCGGGGTTAAGCTATGTGAACTCTCAAGAACCTGGAGTTTTGTCACAGGACAATGCTCTTTGTTTTGTAGATAGGTTTCTCAAAGATAATATCATGGAGTTTGATCAAGAAACTAACTGTCTTAAAATGGAGGGAAAGTCAAAATCCATCCCCAGTACGAAAAGGCAACACAGTTTGGCCAAGACAGTAAATGATAAAGGCAAAGCTAGAAGAACTGGGATTTATGACTGGGATGATAGCCGTGAGGATGAAGGTGGAGGAGATATATTCCTAAGGAGAAAAGAAGATTTTTTTAAGGGTGAAATGCGTAGGCCAAGGTCGTTGCCAGGATTCCAGAAGAGCAAAGTACACAGACTAAATGATGATAAGGAAGACAAGAAACAATTTAGTATTCCTAATAAAAGAAAGACTGCAGTTCATTCTGATTCAAAACTAGGGATGCATATTCTGAAAGTAAGGGACAATATTATACCAGAAGCAACAATGTTAAAACGGAATCTTGCTAACGAATTGGATGAACAATTTAACACTGATTGCTCTAGAGGAGAGATGGAGCCCAATGCTAATGCATGTGCACAGGAGATGCTGGATGTAGGTTTAGATACTCAAATGGCTGCTGAGGCTATGGAAGCTTTATGCAATGTCGGGGATATTGTTGATCATGTTGCTAATAATGCCACTCATGTTACTAGAAGTGGTTTAACTTATAAACTTAATAACTCTTCTACTGGAAAAGTGGGGTCGGGTTCGTCAAAGGAACGTTCGGTACAATATGACAGGAAAAGGAAAGTTGATGTTAAATCAAAGTTGCAAACTTCAGGTTTATCAAAGAAAAGTACTAAAGAAGTCAAGCAATGCACAGAGGACAATATGATGACAAGATCGAAGAGAAGCAAGTTAAATGCAGAAGGCAACCAAACCTCCAGTGCTAATGAAAATGGTAGAGTATCCTTGTCTCCAATAATTGCACAAAGAAAGTCAGATGGAGCTTTGAAAAGACATCAGCTTGATGAGTTGGATAATCCTGATGGTAATAATGGAGAAGGTGGAGGGAGTTCAGTCGACAAAAGGCATTTTCAGGATGGTGTTTGGCATTTTACACCAATTGCCTGCAGAACTCGACGGTCCTTAGCAGTAAACCAATTGATAAATCGAGACATACCATCCAAAAGTTTGAGAGGTGGGGATATAGGGATTCGTTCCCTTGAGAAAAGCAGTGGAATTGGCCTACAGGCATCCAAAGCATTGAATTCTAAATCTACTACAGGATCTTCTGATCACTTTGAAGTAGATGATAATTCCAAATCATGTCAATTTGAGAATTCGGTTCCAAAGGCAAGTGCTGTTAATGTCAGTGATGATGTTAAAATAGATACATTAGATTGTCCTAAAAGAAGGAGATCTCTTAGGATTAGGCAGTTGTCTAATGATGATAAACAATCTGAGACATTAGTTGGTTCATCTAAACCATCTGCACACCCTGAAGATATTGGGAAATCTACTGCTGGGAAGAGAAAAATGAGAACAGATTCTGTAGTCAAATTCCATGTGAATTGCCAAGCTCGCTCATCTTCGTATGATGGTTCAGTAATAACTTCTGTTGATCGAAAACAAGGTAAAATATCAGAGATAAATTTAGATAAAGCTAACCCAGGGGACAATATCAATAATTCTGAAGTCTCCAGTTCAGATGAATCACCAAGAGAGAGGTACAAGTCATCTGACTTGGCATCTGCAACTCAGGCAAAGTGTAAGATGCCTGTGAATGATGCATCACCCATTTGTATGGGTGATGAATATTACAAACAATCATGCAATAGAAATCTTTCAAGATCATGTAAGGAGCTCCATAGAGAACTTCAAAGCTTGAGTGACATCAGACCTGAATTACTTACTCCGTCTAAAGATTCAAGAAAGAGGAGGGACATGACTGATGTTCGAATTCTTTACAGCCACCACTTGGATGAAGATATTCTTAAGCATCAGAAGAAGATTTTAGCACGGCTTGGAGTTTCTGTGGCTTCCTCCATTGCAGATGCAACCCATTTCATAGCTAATCAATTTGTGCGTACAAGGAATATGGTAGAAGCTATTGCTTTTGGTAAACCAGTGGTCACACACTTATGGATTGAAAGCTGTGGTCAAGCTAGCTGTTTTATTGATGAGAGAAATTACATATTGAGGGATGCGAAAAAGGAAAAGGAGTTAGGTTTCAGCATGCCAGTCTCACTAGCACGTGCAATCCAGCATCCTCTTTTAAAGGGTCGAAGAGTATTGGTTACCACAAATACTAAACCTAGTAAAGAGATTGTTTCAAATTTAGCGAGAGCAGTTCAGGGCCAGGTGGTGGAGAAAGTAGGAAGATCTGTTTTCAAGGGCAATACAATTGCAGATAATCTCCTGATCTTATCTTGTGAAGAAGATTATGCCTCTTGTGTGCCTTTTCTTGAAAAGGGGGCAATGGTGTACAGTTCAGAACTGTTGCTGAATGGCATAGTTACTCAGAAGCTGGAGTATCAAAGGCATCGACTTTTTGCAGACAATGTGAAGAAAACTCGTTCCACCTTATGGTTGAAAAGAGATGACAGAACATTTATTCCTGTGACTAAATCTAATTAG

Predicted protein sequences of Glyma15g10570

Limit To All Plant Sequences

>Glyma15g10570.2   sequence type=predicted peptide   gene model=Glyma15g10570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPIDSTGNDDRKIHQDFDFVDTQPFDTDGEEDDVCGYFEDTVPFDEDDDVLETEAVDLAGETQALDDGDAFDDVLLETEAVNLAEEIQALDDGDTQLLEEESDSDRTQVLETVDDDEVSVDNVNGEAADSKKVESSQQNSYGSMPPRFNFLHAESLRQAALACDMDLKETLDVTNSVKGTSQFCQEPLVVKDKGESFLRCSEKDGGVDQENEHGKYSVEVGGFKSKSMCKVANSTVRKLFNDVLPVETNQPSLSSNDFNEGDDLDKLPIYHGELSGLSYVNSQEPGVLSQDNALCFVDRFLKDNIMEFDQETNCLKMEGKSKSIPSTKRQHSLAKTVNDKGKARRTGIYDWDDSREDEGGGDIFLRRKEDFFKGEMRRPRSLPGFQKSKVHRLNDDKEDKKQFSIPNKRKTAVHSDSKLGMHILKVRDNIIPEATMLKRNLANELDEQFNTDCSRGEMEPNANACAQEMLDVGLDTQMAAEAMEALCNVGDIVDHVANNATHVTRSGLTYKLNNSSTGKVGSGSSKERSVQYDRKRKVDVKSKLQTSGLSKKSTKEVKQCTEDNMMTRSKRSKLNAEGNQTSSANENGRVSLSPIIAQRKSDGALKRHQLDELDNPDGNNGEGGGSSVDKRHFQDGVWHFTPIACRTRRSLAVNQLINRDIPSKSLRGGDIGIRSLEKSSGIGLQASKALNSKSTTGSSDHFEVDDNSKSCQFENSVPKASAVNVSDDVKIDTLDCPKRRRSLRIRQLSNDDKQSETLVGSSKPSAHPEDIGKSTAGKRKMRTDSVVKFHVNCQARSSSYDGSVITSVDRKQGKISEINLDKANPGDNINNSEVSSSDESPRERYKSSDLASATQAKCKMPVNDASPICMGDEYYKQSCNRNLSRSCKELHRELQSLSDIRPELLTPSKDSRKRRDMTDVRILYSHHLDEDILKHQKKILARLGVSVASSIADATHFIANQFVRTRNMVEAIAFGKPVVTHLWIESCGQASCFIDERNYILRDAKKEKELGFSMPVSLARAIQHPLLKGRRVLVTTNTKPSKEIVSNLARAVQGQVVEKVGRSVFKGNTIADNLLILSCEEDYASCVPFLEKGAMVYSSELLLNGIVTQKLEYQRHRLFADNVKKTRSTLWLKRDDRTFIPVTKSN*

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