Glyma15g10500 - SoyBase

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Report for Sequence Feature Glyma15g10500

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7619960
stop:	7626386
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1MF74	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MF74_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g10500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10500

Paralog	Evidence	Comments
Glyma13g28611	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g098300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g10500

Limit To All Plant Sequences

>Glyma15g10500.3   sequence type=transcript   gene model=Glyma15g10500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTGGAGAGAAGAGAAGAGAAGAGAGAGAAACACAGATTCTTTCCTTCCCTTCCACAAAAAAAAGGTTTTTCATCGCTCTCTTGCCGATTCCGCCATTTCTCATTTCGGATTCGAGATTGTTGCAGGTGCATTGCTTTTGCCTCTCGATGGTATGTTCCCCGGGAAGTGGGAGAATGGAAGTCATGGCCAGGCTTCTCGCTGCTGAGACTTTCTCTCACACTGTAGCAGATGACTTTGCCCGTGAGAAGTTGGCTGCTGAGTATATTTGTAGAGAACTACGTGAGGCAGATGAAACAAATTTGCTTCAGGAAGAAGTTTTTTTGTCTGGATACAATCTTCATTTTCTTTTGGGGATTTTTAAAATGCTGCTTCACATATCTTATATCACAGATATGCATGTCTATGGTGAGAGCCCCATGACTGATGCCTTGCAGCTGGTATGCTGCAACACTTGCAAGAAGCCAATCAAGGACAGTCAATTTGCTGCTCATGCAGAACTTTGTAGGTCATTACAGCTCACAGAACAGACTATGTTGGAGCTTGATGGCAGCACTGGGAATCGAAAACCTCCTAGGAAGGAAAAGAAAAAGTTAGGAGCTTCTTCTGCAACTCCAGTTTCTTTAGGATACTCAAGTTGTGTAGATGCAGCATCTATGATGGATGGTACTGGAATTAATGCTGGAAATAGAGATCACCCAGCTTCTGTAATGCATCCTCCAACAAAACGTCATAAATTGATAGCAAACATACTTCTACCTGTATTAGAAAGCCATGGAACAGAATCTGGAGAGACAAAAACTGTGAGTTTCACAGATGGAATTACTTGCAATTTGCTGGAAAGAACTATTTCACAACGTGGAGATCCTAACCATAAAAACCATGCACAGGTCCTTGTGCAACATCGACGCATAATGAAGAATGATTTTCCTGCACCCCTTGCTACGAAGATATATTATTCACAAAGGACCAATCGACTGCGTGCCAGAATTCGTCATCTTTACTTCCAGGACTTAAATGGTCAATGTTGTACTGATGTTGTGTGTCCAAAGACATCACATGCAGAGATGGCTGTGTTGCAAGATTCATCTCCAAGGGACCCTTCATTTGATCAAATGAACAATGTGCATGAGGGCCGATTGCCTGCTCAAAAATCTGATCATATTCTTGCAAAAAGCTCAGAAATTGGCTTGCTTAAGGCAGGAGGCCTGCCAAGTAGTGGCTTGTCAAATCAATTTCTTGATAATGTTTCTAGGTCTGCAGCCACTTATGGTGGTTTGACTAGAAGCAACTTTCTTCCAACGTCTTATTCTTTTGGGAGCAACACAGGAAGTCCACTGGGAACAATGCAGCAACCAAATGGGAGTGTTCCTGTTATTTAGTAGCCTTGGTGTAATTTTTTTGGGTAGGTGAAGGTACAGGTAATCAATACACGACGTTAGGATTTAGCTATAAAGTAAATTTTACTCAAATTGTGTATCCTGTCATCTGCTTTGTACATGAAAACTTCTATTATATAATGAATGGAAATGAAGAAATTGTTAGTTC

Coding sequences of Glyma15g10500

Limit To All Plant Sequences

>Glyma15g10500.2   sequence type=CDS   gene model=Glyma15g10500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATGTTCCCCGGGAAGTGGGAGAATGGAAGTCATGGCCAGGCTTCTCGCTGCTGAGACTTTCTCTCACACTGTAGCAGATGACTTTGCCCGTGAGAAGTTGGCTGCTGAGTATATTTGTAGAGAACTACGTGAGGCAGATGAAACAAATTTGCTTCAGGAAGAAGATATGCATGTCTATGGTGAGAGCCCCATGACTGATGCCTTGCAGCTGGTATGCTGCAACACTTGCAAGAAGCCAATCAAGGACAGTCAATTTGCTGCTCATGCAGAACTTTGTAGGTCATTACAGCTCACAGAACAGACTATGTTGGAGCTTGATGGCAGCACTGGGAATCGAAAACCTCCTAGGAAGGAAAAGAAAAAGTTAGGAGCTTCTTCTGCAACTCCAGTTTCTTTAGGATACTCAAGTTGTGTAGATGCAGCATCTATGATGGATGGTACTGGAATTAATGCTGGAAATAGAGATCACCCAGCTTCTGTAATGCATCCTCCAACAAAACGTCATAAATTGATAGCAAACATACTTCTACCTGTATTAGAAAGCCATGGAACAGAATCTGGAGAGACAAAAACTGTGAGTTTCACAGATGGAATTACTTGCAATTTGCTGGAAAGAACTATTTCACAACGTGGAGATCCTAACCATAAAAACCATGCACAGGTCCTTGTGCAACATCGACGCATAATGAAGAATGATTTTCCTGCACCCCTTGCTACGAAGATATATTATTCACAAAGGACCAATCGACTGCGTGCCAGAATTCGTCATCTTTACTTCCAGGACTTAAATGGTCAATGTTGTACTGATGTTGTGTGTCCAAAGACATCACATGCAGAGATGGCTGTGTTGCAAGATTCATCTCCAAGGGACCCTTCATTTGATCAAATGAACAATGTGCATGAGGGCCGATTGCCTGCTCAAAAATCTGATCATATTCTTGCAAAAAGCTCAGAAATTGGCTTGCTTAAGGCAGGAGGCCTGCCAAGTAGTGGCTTGTCAAATCAATTTCTTGATAATGTTTCTAGGTCTGCAGCCACTTATGGTGGTTTGACTAGAAGCAACTTTCTTCCAACGTCTTATTCTTTTGGGAGCAACACAGGAAGTCCACTGGGAACAATGCAGCAACCAAATGGGAGTGTTCCTGTTATTTAG

>Glyma15g10500.3   sequence type=CDS   gene model=Glyma15g10500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTGGAGAGAAGAGAAGAGAAGAGAGAGAAACACAGATTCTTTCCTTCCCTTCCACAAAAAAAAGGTTTTTCATCGCTCTCTTGCCGATTCCGCCATTTCTCATTTCGGATTCGAGATTGTTGCAGGTGCATTGCTTTTGCCTCTCGATGGTATGTTCCCCGGGAAGTGGGAGAATGGAAGTCATGGCCAGGCTTCTCGCTGCTGAGACTTTCTCTCACACTGTAGCAGATGACTTTGCCCGTGAGAAGTTGGCTGCTGAGTATATTTGTAGAGAACTACGTGAGGCAGATGAAACAAATTTGCTTCAGGAAGAAGTTTTTTTGTCTGGATACAATCTTCATTTTCTTTTGGGGATTTTTAAAATGCTGCTTCACATATCTTATATCACAGATATGCATGTCTATGGTGAGAGCCCCATGACTGATGCCTTGCAGCTGGTATGCTGCAACACTTGCAAGAAGCCAATCAAGGACAGTCAATTTGCTGCTCATGCAGAACTTTGTAGGTCATTACAGCTCACAGAACAGACTATGTTGGAGCTTGATGGCAGCACTGGGAATCGAAAACCTCCTAGGAAGGAAAAGAAAAAGTTAGGAGCTTCTTCTGCAACTCCAGTTTCTTTAGGATACTCAAGTTGTGTAGATGCAGCATCTATGATGGATGGTACTGGAATTAATGCTGGAAATAGAGATCACCCAGCTTCTGTAATGCATCCTCCAACAAAACGTCATAAATTGATAGCAAACATACTTCTACCTGTATTAGAAAGCCATGGAACAGAATCTGGAGAGACAAAAACTGTGAGTTTCACAGATGGAATTACTTGCAATTTGCTGGAAAGAACTATTTCACAACGTGGAGATCCTAACCATAAAAACCATGCACAGGTCCTTGTGCAACATCGACGCATAATGAAGAATGATTTTCCTGCACCCCTTGCTACGAAGATATATTATTCACAAAGGACCAATCGACTGCGTGCCAGAATTCGTCATCTTTACTTCCAGGACTTAAATGGTCAATGTTGTACTGATGTTGTGTGTCCAAAGACATCACATGCAGAGATGGCTGTGTTGCAAGATTCATCTCCAAGGGACCCTTCATTTGATCAAATGAACAATGTGCATGAGGGCCGATTGCCTGCTCAAAAATCTGATCATATTCTTGCAAAAAGCTCAGAAATTGGCTTGCTTAAGGCAGGAGGCCTGCCAAGTAGTGGCTTGTCAAATCAATTTCTTGATAATGTTTCTAGGTCTGCAGCCACTTATGGTGGTTTGACTAGAAGCAACTTTCTTCCAACGTCTTATTCTTTTGGGAGCAACACAGGAAGTCCACTGGGAACAATGCAGCAACCAAATGGGAGTGTTCCTGTTATTTAG

Predicted protein sequences of Glyma15g10500

Limit To All Plant Sequences

>Glyma15g10500.2   sequence type=predicted peptide   gene model=Glyma15g10500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCSPGSGRMEVMARLLAAETFSHTVADDFAREKLAAEYICRELREADETNLLQEEDMHVYGESPMTDALQLVCCNTCKKPIKDSQFAAHAELCRSLQLTEQTMLELDGSTGNRKPPRKEKKKLGASSATPVSLGYSSCVDAASMMDGTGINAGNRDHPASVMHPPTKRHKLIANILLPVLESHGTESGETKTVSFTDGITCNLLERTISQRGDPNHKNHAQVLVQHRRIMKNDFPAPLATKIYYSQRTNRLRARIRHLYFQDLNGQCCTDVVCPKTSHAEMAVLQDSSPRDPSFDQMNNVHEGRLPAQKSDHILAKSSEIGLLKAGGLPSSGLSNQFLDNVSRSAATYGGLTRSNFLPTSYSFGSNTGSPLGTMQQPNGSVPVI*

>Glyma15g10500.3   sequence type=predicted peptide   gene model=Glyma15g10500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGEKRREERETQILSFPSTKKRFFIALLPIPPFLISDSRLLQVHCFCLSMVCSPGSGRMEVMARLLAAETFSHTVADDFAREKLAAEYICRELREADETNLLQEEVFLSGYNLHFLLGIFKMLLHISYITDMHVYGESPMTDALQLVCCNTCKKPIKDSQFAAHAELCRSLQLTEQTMLELDGSTGNRKPPRKEKKKLGASSATPVSLGYSSCVDAASMMDGTGINAGNRDHPASVMHPPTKRHKLIANILLPVLESHGTESGETKTVSFTDGITCNLLERTISQRGDPNHKNHAQVLVQHRRIMKNDFPAPLATKIYYSQRTNRLRARIRHLYFQDLNGQCCTDVVCPKTSHAEMAVLQDSSPRDPSFDQMNNVHEGRLPAQKSDHILAKSSEIGLLKAGGLPSSGLSNQFLDNVSRSAATYGGLTRSNFLPTSYSFGSNTGSPLGTMQQPNGSVPVI*

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