Glyma15g10480 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g10480

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7603411
stop:	7606365
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18670	AT	Annotation by Michelle Graham. TAIR10: beta-amylase 3 \| chr5:6226138-6227999 FORWARD LENGTH=536	SoyBase	E_val: 0	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016161	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-amylase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PF01373	PFAM	Glycosyl hydrolase family 14	JGI		ISS
UniRef100_Q5F304	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-amylase n=1 Tax=Glycine max RepID=Q5F304_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5F304	UniRef	Annotation by Michelle Graham. Best UniRef hit: Beta-amylase n=1 Tax=Glycine max RepID=Q5F304_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g10480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10480

Paralog	Evidence	Comments
Glyma13g28630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g098100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10480

Limit To All Plant Sequences

>Glyma15g10480.1   sequence type=CDS   gene model=Glyma15g10480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTTCGGTGATTGGAAGCTCTCAAGCGAATCTGGGAGCGTCGGAATTGGCATCTAGGGAAGTTGGATTTTGCAATCTTAAGAACAATTTAAGGGCTTTGAATGATAGAGTTAGTTTTGGTAGGAATAATATACGGTGGGAGAAGGCTGGGATTAGCTTCACTTTGAGGGCTCTTCAGACTGAACCCGTTAGAGAGGAGAAGAAGCCTTCTGGGATTGGAACAAGATCCAAAATGGCAAATGGTTTAAGATTATTTGTGGGGCTTCCCCTAGATGCAGTTTCTTATGCCTGCAATTCAATAAACCATGCTAGAGCAATTTCAGCTGGCCTAAAAGCTTTGAAGCTCTTAGGAGTTGAAGGTGTTGAGCTCCCTATTTGGTGGGGAATTGTTGAGAAAGATGCCATGGGACAATATGACTGGTCAGGCTATCTTGCTATTGCTGAGATGGTCCAGAAAGTGGGTCTCAAGCTTCATGTGTCTCTTTGCTTTCATGGGTCTAAGAAACCAAATATCCCCCTACCTAAATGGGTATCTCAGATTGGTGAATCTCAACCCAGTATTTTCTTCACAGATAGGTCAGGACAGCATTATAAAGAATGCCTGTCCATGGCAGTTGATAATCTTCCTGTTCTTGATGGGAAGACTCCAGTCCAAGTGTACCAGAGTTTCTGTGAGAGCTTCAAGTCTTCATTCTCTCCATTCATGGGCTCTACAATCACGAGCATTTCCATGGGTTTAGGACCAGATGGTGAGCTACGTTATCCATCTCACCACTGGCTGCCGAGTAATGGTAAAACTCAAGGTGCTGGGGAATTCCAGTGTTATGACCAAAACATGCTCAGCTTTCTCAAGCAACATGCTGAAGCATCTGGAAATCCTCTGTGGGGGCTTGGTGGTCCTCATGATGCACCTATCTATGACCAGCCCCCATACAATGGCTTCTTCAATGATGGGGCTTCTTGGGAGTCTACTTATGGGGACTTCTTCCTCTCTTGGTATTCCAATCAGCTCATAGCTCATGGAGACTGCCTCCTTTCATTAGCATCTTCAACTTTTGGTGACTCTGGAGTGGCGATCTATGGAAAAATCCCTCTTATGCACTCTTGGTATGGAACTCGATCCCATCCTTCAGAGCTAACAGCAGGGTTCTATAACACAGTTAACAGGGATGGCTATGGACCAGTTGCACAGATGTTTGCTCGGAACTCGTGCAAAATTATATTACCTGGCATGGACCTTTCGGACGCGAACCAACCAAAGGAAAACCATTCTAGCCCTGAGTTGCTACTTGCACAAATTATGGAAGCTTGCAAAAAGCATGAGGTTCAGGTTTCAGGTCAAAATTCGTCTGAATCTGGTGTTCCAGGGGGGTTTGAACAAATTAAGAAGAATTTATCTGGAGATAATGTATTGGACTTGTTCACATATCATAGAATGGGAGCATCATTCTTCTCTCCAGAGCATTTTCCTTTGTTCACTGAGTTTGTCCGGAGCCTTAAGCAACCGGAACTGCATTCAGATGATCTACCTGCTGAGGAGGAAGTAGGTGCTGAATCCGCCGTGGTTATGAGCCGTGATTCAACTGTGAGCATGCAAGCAGCCTAA

Predicted protein sequences of Glyma15g10480

Limit To All Plant Sequences

>Glyma15g10480.1   sequence type=predicted peptide   gene model=Glyma15g10480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVSVIGSSQANLGASELASREVGFCNLKNNLRALNDRVSFGRNNIRWEKAGISFTLRALQTEPVREEKKPSGIGTRSKMANGLRLFVGLPLDAVSYACNSINHARAISAGLKALKLLGVEGVELPIWWGIVEKDAMGQYDWSGYLAIAEMVQKVGLKLHVSLCFHGSKKPNIPLPKWVSQIGESQPSIFFTDRSGQHYKECLSMAVDNLPVLDGKTPVQVYQSFCESFKSSFSPFMGSTITSISMGLGPDGELRYPSHHWLPSNGKTQGAGEFQCYDQNMLSFLKQHAEASGNPLWGLGGPHDAPIYDQPPYNGFFNDGASWESTYGDFFLSWYSNQLIAHGDCLLSLASSTFGDSGVAIYGKIPLMHSWYGTRSHPSELTAGFYNTVNRDGYGPVAQMFARNSCKIILPGMDLSDANQPKENHSSPELLLAQIMEACKKHEVQVSGQNSSESGVPGGFEQIKKNLSGDNVLDLFTYHRMGASFFSPEHFPLFTEFVRSLKQPELHSDDLPAEEEVGAESAVVMSRDSTVSMQAA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain