SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20020 | AT | Annotation by Michelle Graham. TAIR10: protein arginine methyltransferase 6 | chr3:6984055-6987945 REVERSE LENGTH=435 | SoyBase | E_val: 3.00E-125 | ISS |
| GO:0006479 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| GO:0008276 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein methyltransferase activity | SoyBase | N/A | ISS |
| KOG1499 | KOG | Protein arginine N-methyltransferase PRMT1 and related enzymes | JGI | ISS | |
| PTHR11006 | Panther | PROTEIN ARGININE N-METHYLTRANSFERASE | JGI | ISS | |
| PTHR11006:SF43 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF06325 | PFAM | Ribosomal protein L11 methyltransferase (PrmA) | JGI | ISS | |
| UniRef100_B9RGH9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein arginine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RGH9_RICCO | SoyBase | E_val: 9.00E-127 | ISS |
| UniRef100_I1MF66 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF66_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g10450 not represented in the dataset |
Glyma15g10450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g097800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g10450.2 sequence type=CDS gene model=Glyma15g10450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGGTTGTTCTTGATGTTGGATGCGGTACTGGCATCCTTGCTATACTCTGTGCTCAGGCTGGTGCAAAGCGGGTGTATGCAGTTGAAGCAACTCATGACATTGCACATGCGACAAGCAAAGTAGTTGAAGATAACAATCTTTCAAATATTATCACGGTATTGCAAGGACGAATTGAGGATGTTGAAATCAAGGAACAAGTTGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTACATAAGAACATGCTGGAAAGTGTTATTACTGCCAGAGATCGCTGGCTCAAACCAGGAGGTCTAATGCTTCCTTCAAAGGCAACGTTGTACATGGCTCCTGTTACAAATACCAAAAGATACGAGGAAAGCATTAACTACTGGAATAGTGTTTATGGAATTAATATGTCTGCATTTAAACCATTAGCAAAACAGAGTGCATTCCTGGGACCTTGTGTGGAGACAATTACTTTTGAAAATGTTTTGGCAAGGCCACAAGTGGTGAAATGCGTGAACTGTGATTCTGTTACCATTCCTGAGCTACGATCTGTGACAGAAAGCTTTAAGTTCAACTCAACGGTGAAAGCACCGCTACATGGTTTTGCGTTTTGGTTTGATGTTGAGTTTGGACCATCACCAATGCCACTCAGTATTCGTTACCCGACTTCATCTGTTGACGATCATCCTCCGGTGGATAGTCAAACAAGAAGAGACCCTACGCTGCTCCTGTCCACTGCACCTAATGTCCTGCCAACACATTGGCAACAGACCTTGATATACTTTTTTGATCCAAAAGATCTGAAACAAGATCAACTCATTGAAGGAAGAGTGACATTGTCACAGAATCAAGCAAGTTCCCGGCTTCTGGATGTTAAAATTGCATATGACACAGGAGGTCAATCCCATGTGAAATATTCTTTTCTGAGATGA
>Glyma15g10450.2 sequence type=predicted peptide gene model=Glyma15g10450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQVVLDVGCGTGILAILCAQAGAKRVYAVEATHDIAHATSKVVEDNNLSNIITVLQGRIEDVEIKEQVDVIISEWMGYMLLHKNMLESVITARDRWLKPGGLMLPSKATLYMAPVTNTKRYEESINYWNSVYGINMSAFKPLAKQSAFLGPCVETITFENVLARPQVVKCVNCDSVTIPELRSVTESFKFNSTVKAPLHGFAFWFDVEFGPSPMPLSIRYPTSSVDDHPPVDSQTRRDPTLLLSTAPNVLPTHWQQTLIYFFDPKDLKQDQLIEGRVTLSQNQASSRLLDVKIAYDTGGQSHVKYSFLR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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