Glyma15g10450 - SoyBase

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Report for Sequence Feature Glyma15g10450

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7571058
stop:	7578076
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20020	AT	Annotation by Michelle Graham. TAIR10: protein arginine methyltransferase 6 \| chr3:6984055-6987945 REVERSE LENGTH=435	SoyBase	E_val: 3.00E-125	ISS
GO:0006479	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein methyltransferase activity	SoyBase	N/A	ISS
KOG1499	KOG	Protein arginine N-methyltransferase PRMT1 and related enzymes	JGI		ISS
PTHR11006	Panther	PROTEIN ARGININE N-METHYLTRANSFERASE	JGI		ISS
PTHR11006:SF43	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF06325	PFAM	Ribosomal protein L11 methyltransferase (PrmA)	JGI		ISS
UniRef100_B9RGH9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein arginine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RGH9_RICCO	SoyBase	E_val: 9.00E-127	ISS
UniRef100_I1MF66	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF66_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g10450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g10450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g097800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10450

Limit To All Plant Sequences

>Glyma15g10450.2   sequence type=CDS   gene model=Glyma15g10450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGTTGTTCTTGATGTTGGATGCGGTACTGGCATCCTTGCTATACTCTGTGCTCAGGCTGGTGCAAAGCGGGTGTATGCAGTTGAAGCAACTCATGACATTGCACATGCGACAAGCAAAGTAGTTGAAGATAACAATCTTTCAAATATTATCACGGTATTGCAAGGACGAATTGAGGATGTTGAAATCAAGGAACAAGTTGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTACATAAGAACATGCTGGAAAGTGTTATTACTGCCAGAGATCGCTGGCTCAAACCAGGAGGTCTAATGCTTCCTTCAAAGGCAACGTTGTACATGGCTCCTGTTACAAATACCAAAAGATACGAGGAAAGCATTAACTACTGGAATAGTGTTTATGGAATTAATATGTCTGCATTTAAACCATTAGCAAAACAGAGTGCATTCCTGGGACCTTGTGTGGAGACAATTACTTTTGAAAATGTTTTGGCAAGGCCACAAGTGGTGAAATGCGTGAACTGTGATTCTGTTACCATTCCTGAGCTACGATCTGTGACAGAAAGCTTTAAGTTCAACTCAACGGTGAAAGCACCGCTACATGGTTTTGCGTTTTGGTTTGATGTTGAGTTTGGACCATCACCAATGCCACTCAGTATTCGTTACCCGACTTCATCTGTTGACGATCATCCTCCGGTGGATAGTCAAACAAGAAGAGACCCTACGCTGCTCCTGTCCACTGCACCTAATGTCCTGCCAACACATTGGCAACAGACCTTGATATACTTTTTTGATCCAAAAGATCTGAAACAAGATCAACTCATTGAAGGAAGAGTGACATTGTCACAGAATCAAGCAAGTTCCCGGCTTCTGGATGTTAAAATTGCATATGACACAGGAGGTCAATCCCATGTGAAATATTCTTTTCTGAGATGA

Predicted protein sequences of Glyma15g10450

Limit To All Plant Sequences

>Glyma15g10450.2   sequence type=predicted peptide   gene model=Glyma15g10450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQVVLDVGCGTGILAILCAQAGAKRVYAVEATHDIAHATSKVVEDNNLSNIITVLQGRIEDVEIKEQVDVIISEWMGYMLLHKNMLESVITARDRWLKPGGLMLPSKATLYMAPVTNTKRYEESINYWNSVYGINMSAFKPLAKQSAFLGPCVETITFENVLARPQVVKCVNCDSVTIPELRSVTESFKFNSTVKAPLHGFAFWFDVEFGPSPMPLSIRYPTSSVDDHPPVDSQTRRDPTLLLSTAPNVLPTHWQQTLIYFFDPKDLKQDQLIEGRVTLSQNQASSRLLDVKIAYDTGGQSHVKYSFLR*

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