SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18660 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:6220872-6222125 REVERSE LENGTH=417 | SoyBase | E_val: 0 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0051744 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | SoyBase | N/A | ISS |
| KOG1203 | KOG | Predicted dehydrogenase | JGI | ISS | |
| PTHR14194 | Panther | NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED | JGI | ISS | |
| PTHR14194:SF15 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF05368 | PFAM | NmrA-like family | JGI | ISS | |
| UniRef100_D7LYF5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pale-green and chlorophyll B reduced 2 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LYF5_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MF65 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF65_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g10440 not represented in the dataset |
Glyma15g10440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g28670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g097700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g10440.1 sequence type=CDS gene model=Glyma15g10440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCCTCTGCTACACTTCCAATTTCATCTCACTGAACCATCAAAAGAGCTTCTCCTTAACCTTCTCTTCAGAGTCTTCTCCTCACTTCATCAACCTATTTCCGGTTAAGCCTCAGAAACCACACCACCCTATTAAGTTCACCGCAGAAAGGTTCAAACTTTTTGCCTCTCTGACATCATCTCCATCCGTTGAGACCTCCCCATCAAGTTATAGGAGCAAGAGCCCCAAAGATGTTAACGTCTTGGTGGTGGGTTCAACTGGGTACATTGGAAAGTTCGTGGTGAGAGAGTTAGTTAAGAGAGGGTTTAATGTTACAGCCATAGCTAGAGAGAGGAGTGGAATTAAGGGCAGTGTTGATAAGGATCAGACTTTGGGTCAGTTGAGAGGGGCCAATGTGTGTTTCTCAGACGTGACCAATTTGGATGTTTTTGAGGAATCTCTGAACAGGTTGGGGAAGTCATTTGATGTTGTGGTGTCATGTCTTGCTAGTAGAAATGGAGGTGTGAAGGACTCTTGGAAGATAGATTATGAGGCAACAAGGAATAGCCTTGTTGCTGGAAGAAAACGTGGGGCTTCACATTTTGTGTTGCTTTCAGCAATATGTGTGCAGAAGCCGCTCCTCGAGTTTCAGCGTGCCAAGTTGAAGTTTGAGGATGAGTTGGTGAAGTTAGCTGAGGAGGATGGTGGATTCACTTATAGCATAGTGAGGCCAACTGCATTTTTCAAGAGTTTGGGGGGTCAGGTTGAGTTAGTGAAGGATGGGAAACCTTATGTTATGTTTGGAGATGGGAAACTGTGTGCTTGTAAGCCTATAAGTGAGTCTGATTTGGCTTCTTTTATTGTGGATTGTGTGCTGAGTGAGGATAAGATTAACCAGGTGTTGCCAATTGGAGGGCCTGGGAAGGCATTGACTCCATTGGAACAAGGGGAGATGCTGTTTAGGCTTTTGGGGAAGGAGCCTAAGTTCTTGAAAGTTCCAATCGGGATCATGGATTTCGCCATTGGGGTTCTTGACTTTTTGGTTAAGGTCTTTCCTTCACTGGAAGATGCTGCTGAGTTTGGGAAGATTGGAAGGTACTATGCGGCGGAAAGTATGTTGCTTCTGGATCCCGAGACCGGAGAATACAGTGCTGAGAAAACACCTAGCTATGGGAATGATACATTGGAAGAGTTTTTTGCAAGGGTTCTCAGGGAGGGCATGGCTGGTCAAGAACTAGGTGAGCAAACAATATTTTAA
>Glyma15g10440.1 sequence type=predicted peptide gene model=Glyma15g10440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLCYTSNFISLNHQKSFSLTFSSESSPHFINLFPVKPQKPHHPIKFTAERFKLFASLTSSPSVETSPSSYRSKSPKDVNVLVVGSTGYIGKFVVRELVKRGFNVTAIARERSGIKGSVDKDQTLGQLRGANVCFSDVTNLDVFEESLNRLGKSFDVVVSCLASRNGGVKDSWKIDYEATRNSLVAGRKRGASHFVLLSAICVQKPLLEFQRAKLKFEDELVKLAEEDGGFTYSIVRPTAFFKSLGGQVELVKDGKPYVMFGDGKLCACKPISESDLASFIVDCVLSEDKINQVLPIGGPGKALTPLEQGEMLFRLLGKEPKFLKVPIGIMDFAIGVLDFLVKVFPSLEDAAEFGKIGRYYAAESMLLLDPETGEYSAEKTPSYGNDTLEEFFARVLREGMAGQELGEQTIF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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