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Report for Sequence Feature Glyma15g10420

Feature Type:gene_model
Chromosome:Gm15
Start:7547540
stop:7551188
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02140AT Annotation by Michelle Graham. TAIR10: mago nashi family protein | chr1:403467-404401 REVERSE LENGTH=150 SoyBaseE_val: 6.00E-96ISS
GO:0007530GO-bp Annotation by Michelle Graham. GO Biological Process: sex determination SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010183GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube guidance SoyBaseN/AISS
GO:0010628GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of gene expression SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005654GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016607GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck SoyBaseN/AISS
GO:0035145GO-cc Annotation by Michelle Graham. GO Cellular Compartment: exon-exon junction complex SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG3392 KOG Exon-exon junction complex, Magoh component JGI ISS
PTHR12638Panther FAMILY NOT NAMED JGI ISS
PF02792PFAM Mago nashi protein JGI ISS
UniRef100_G7J8K6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mago nashi-like protein n=2 Tax=Medicago truncatula RepID=G7J8K6_MEDTR SoyBaseE_val: 2.00E-102ISS
UniRef100_I1MF63UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF63_SOYBN SoyBaseE_val: 4.00E-107ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g10420 not represented in the dataset

Glyma15g10420 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g097500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g10420.1   sequence type=CDS   gene model=Glyma15g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGAAGAGGAGAAGGGTGAATTCTACTTGCGATACTACGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCAGACCCGATGGCAAGCTCCGCTACGCGAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTCAACCCTGCCGTTTTGCGTGAGTGCCGCCGTATCATCGCCGAGAGCGAAATCATGAAGGAAGACGACAACAACTGGCCCGAACCGGACCGAGTTGGACGGCAGGAGCTGGAGATTGTGATGGGGAACGAGCACATTTCCTTCACCACTTCCAAGATTGGATCTCTCGTCGATGTTCAGAGCAGTGCAGATCCCGACGGGCTACGCATATTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTCATTTCACTTCACTTCAAGATCAAGCCTATATAA

>Glyma15g10420.1   sequence type=predicted peptide   gene model=Glyma15g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEEEKGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLNPAVLRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPDGLRIFYYLVQDLKCFVFSLISLHFKIKPI*







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