SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g10410

Feature Type:gene_model
Chromosome:Gm15
Start:7541580
stop:7545084
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g10410
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G15630AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr4:8917527-8918683 FORWARD LENGTH=190 SoyBaseE_val: 7.00E-52ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043424GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF60Panther INTEGRAL MEMBRANE FAMILY PROTEIN JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_C6TBD0UniRef Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein 6 n=1 Tax=Glycine max RepID=CSPL6_SOYBN SoyBaseE_val: 1.00E-79ISS
UniRef100_UPI000233B170UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B170 related cluster n=1 Tax=unknown RepID=UPI000233B170 SoyBaseE_val: 4.00E-134ISS

Expression Patterns of Glyma15g10410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10410
ParalogEvidenceComments
Glyma13g28680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10410 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g097400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g10410
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g10410
>Glyma15g10410.1   sequence type=CDS   gene model=Glyma15g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTCAGAGTAAGGGTAGTTTTAATGTGATGGAAGGGAGTGAGGGCAAAGGAAGGGAGTTTGTGGTGGAAAAGTCTGCATCATCAATAGTGGGAACTTGTGATTTGGTTCTAAGGATTTTGGCCTTTTTACTAACCCTTGTGGCTGCTGTAGTTATTGGGACAGATAAGCAAACTGCCATTGTTCCAATCAAGCTTGTGGATTCTATGCCAACTTTGTACGTTCCTGTTGCAGCTAAGTGGCATTACTTGTCTGCCTTTGTCTATTATGTGGGGGCAAATGCAATAGCATGTGCATATGCAATACTGTCTCTCTTGCTCACTCTTGCAAATAGGCGTAAAGGCAAAGGAACGATGGAGACATTGATCACTGTGCTGGACACAGTAATGGTAGCTTTGCTCTTCTCCGGCAACGGAGCCGCCATGGCAGTTGGTCTCCTTGGCTTGCAAGGAAACTCACATGTGCATTGGAACAAAGTGTGCAATGAGTTTGGGAAATTTTGTGACCAAGTGGCTGCTTCCCTTTTCATATCACTGCTTGGATCAATAGCATTCCTCTTGCTGCTGATAGTTCCTCCTGTTTTGAGACTTAAACAGACAACTTAA
Predicted protein sequences of Glyma15g10410
>Glyma15g10410.1   sequence type=predicted peptide   gene model=Glyma15g10410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGQSKGSFNVMEGSEGKGREFVVEKSASSIVGTCDLVLRILAFLLTLVAAVVIGTDKQTAIVPIKLVDSMPTLYVPVAAKWHYLSAFVYYVGANAIACAYAILSLLLTLANRRKGKGTMETLITVLDTVMVALLFSGNGAAMAVGLLGLQGNSHVHWNKVCNEFGKFCDQVAASLFISLLGSIAFLLLLIVPPVLRLKQTT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo