Glyma15g10400 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g10400

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7535969
stop:	7539922
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18650	AT	Annotation by Michelle Graham. TAIR10: CHY-type/CTCHY-type/RING-type Zinc finger protein \| chr5:6218260-6220374 FORWARD LENGTH=267	SoyBase	E_val: 6.00E-166	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1940	KOG	Zn-finger protein	JGI		ISS
PTHR21319	Panther	RING FINGER AND CHY ZINC FINGER DOMAIN CONTAINING 1	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
PF05495	PFAM	CHY zinc finger	JGI		ISS
UniRef100_G7ISH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger and CHY zinc finger domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ISH8_MEDTR	SoyBase	E_val: 1.00E-177	ISS
UniRef100_I1MF60	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF60_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g10400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10400

Paralog	Evidence	Comments
Glyma13g28700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g097300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g10400

Limit To All Plant Sequences

>Glyma15g10400.2   sequence type=transcript   gene model=Glyma15g10400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGATCCAACGGTCACATCTCTTTCTGTTAATTATTGTTGAAACTCATTACATCCTCTTGTCTTCTGTCATGCCAATCCTTTCCCACCACACCACCTTATCCTTTTTCTTTCTCTCTCTTACCAAGTGGATACATTCTATTTCTTATCAATTTTGGTTAGTAGCCAAAGATTTTTGATACTATTACATTACATTGCATTAAAATACTACTACATAATAACAACAATGGCTTGCTCCTCCTCCTTCCTCTTTCTTTGTCAATATCAACACCAACAGAATCTTCCCATTTCAGGAAACTCTTCTCTCAGCCTTCCTTCCCGGCCTTTCTTTTCCAAAACTCATGGAAGGTTCTATCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGCCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCATTCGCCAGGACGTTCAACATGTTGTTTGTACAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGTGTCAGAATGGGAGAATATTTCTGCAGCATCTGCAAATTCTTCGATGATGATACCGGGAAACAACAGTTTCATTGTGATGATTGTGGGATTTGTAGAATTGGTGGTCGAGAGAATTATTTCCACTGCAATAAGTGTGGGTCTTGCTATTCAACTAGTCTGCGTGATAATCATATGTGTGTGGAGAATTCCATGAGGCATCATTGCCCCATTTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGTTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCAAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGGTAGTTGGTTAAATTATATAGATGCTTTCACTTGATTCCTTGGTTTTTATATGGTTCAATAATCTGGAAGATTATTTACTGGCAGAAATGATGTAGTACAATTATGATGTCTTACTCATTTATTTTTGCTATATTAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTCTGTAATGACTGTAATGACACAACTGAAGTTTACTTCCATGTTCTTGGGCAAAAATGTGGTCACTGCAGTTCATATAATACTCGCGCTATAGCTCCCCCTGTTCTTCCTCAATGACCAGATACTTATGGTTTTGGAGACAAATTTTTCCGGGCAGTAAATTAAAATTATGACTCATTTATTGTAGAGCCTTATTTGATTCATCATCAAGATTAATGATGTACTATGCCCTGAAACTTATCTTGGGTTATTCTTCCTCCACCATTTGGAGTGGGACTGGTGGTTTTGTTATGAGGCACTAATTGGGCTGATATAAACATGGGTATACTGTAATATAGAGAATGTGGTTTAGTCAGCATGAGCTACTAGTAATTGTGTTTACTAGTGATGTATTGATGTTGGAGGATGGATTGGCTTGTCTTTGCCATTATTGAATTTAATCAACACAACTCAATGATTTCTTCCCTGCATAAATCAATCATATGCTATTACCTTTATAGTGATTGATTTGTTATGATTCAACGTACATATTGTGTTATACAATTCCATTTATCTATAATAACAATCTCCTTTTCC

Coding sequences of Glyma15g10400

Limit To All Plant Sequences

>Glyma15g10400.1   sequence type=CDS   gene model=Glyma15g10400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTTCTATCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGCCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCATTCGCCAGGACGTTCAACATGTTGTTTGTACAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGTGTCAGAATGGGAGAATATTTCTGCAGCATCTGCAAATTCTTCGATGATGATACCGGGAAACAACAGTTTCATTGTGATGATTGTGGGATTTGTAGAATTGGTGGTCGAGAGAATTATTTCCACTGCAATAAGTGTGGGTCTTGCTATTCAACTAGTCTGCGTGATAATCATATGTGTGTGGAGAATTCCATGAGGCATCATTGCCCCATTTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGTTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCAAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTCTGTAATGACTGTAATGACACAACTGAAGTTTACTTCCATGTTCTTGGGCAAAAATGTGGTCACTGCAGTTCATATAATACTCGCGCTATAGCTCCCCCTGTTCTTCCTCAATGA

>Glyma15g10400.2   sequence type=CDS   gene model=Glyma15g10400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTTCTATCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGCCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCATTCGCCAGGACGTTCAACATGTTGTTTGTACAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGTGTCAGAATGGGAGAATATTTCTGCAGCATCTGCAAATTCTTCGATGATGATACCGGGAAACAACAGTTTCATTGTGATGATTGTGGGATTTGTAGAATTGGTGGTCGAGAGAATTATTTCCACTGCAATAAGTGTGGGTCTTGCTATTCAACTAGTCTGCGTGATAATCATATGTGTGTGGAGAATTCCATGAGGCATCATTGCCCCATTTGTTATGAGTACCTTTTTGACTCATTGAAAGACACTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGTTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCAAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGGTAGTTGGTTAA

Predicted protein sequences of Glyma15g10400

Limit To All Plant Sequences

>Glyma15g10400.1   sequence type=predicted peptide   gene model=Glyma15g10400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSILERLDFGKMGYGCKHYRRRCRIRAPCCNELYFCRHCHNEATSMLSNPFDRHELIRQDVQHVVCTVCDTEQPVAQVCTNCGVRMGEYFCSICKFFDDDTGKQQFHCDDCGICRIGGRENYFHCNKCGSCYSTSLRDNHMCVENSMRHHCPICYEYLFDSLKDTAVMKCGHTMHSECYLEMLKRDKYCCPICSKSVMDMSRAWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHVLGQKCGHCSSYNTRAIAPPVLPQ*

>Glyma15g10400.2   sequence type=predicted peptide   gene model=Glyma15g10400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSILERLDFGKMGYGCKHYRRRCRIRAPCCNELYFCRHCHNEATSMLSNPFDRHELIRQDVQHVVCTVCDTEQPVAQVCTNCGVRMGEYFCSICKFFDDDTGKQQFHCDDCGICRIGGRENYFHCNKCGSCYSTSLRDNHMCVENSMRHHCPICYEYLFDSLKDTAVMKCGHTMHSECYLEMLKRDKYCCPICSKSVMDMSRAWKRIDEEVVG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain