Glyma15g10350 - SoyBase

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Report for Sequence Feature Glyma15g10350

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7496117
stop:	7496425
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21460	AT	Annotation by Michelle Graham. TAIR10: Glutaredoxin family protein \| chr3:7557567-7557875 REVERSE LENGTH=102	SoyBase	E_val: 9.00E-56	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
KOG1752	KOG	Glutaredoxin and related proteins	JGI		ISS
PTHR10168	Panther	GLUTAREDOXIN	JGI		ISS
PF00462	PFAM	Glutaredoxin	JGI		ISS
UniRef100_G7ISG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Monothiol glutaredoxin-S4 n=1 Tax=Medicago truncatula RepID=G7ISG7_MEDTR	SoyBase	E_val: 2.00E-64	ISS
UniRef100_I1MF54	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF54_SOYBN	SoyBase	E_val: 4.00E-69	ISS

Expression Patterns of Glyma15g10350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10350

Paralog	Evidence	Comments
Glyma13g28740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g096700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10350

Limit To All Plant Sequences

>Glyma15g10350.1   sequence type=CDS   gene model=Glyma15g10350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGCATAACAAAATTGGCATCACAAAAGGCAGTGGTGATCTTCAGCAAGAGCTCATGTGGGATGAGCCATGCAATTAAGAGGCTGTTCTATGAGCAAGGTGTGGGGCCCGCAATCTATGAGCTTGATGAGGACACAAGAGGGAAGGAAATGGAATGGGCTCTGTTGAGACTCGGGTGCAACCCTTCTGTGCCAGCAGTGTTCGTTGGTGGCAAGTTTGTGGGTTCAGCCAACACGGTCATGACCCTTCACCTCAATGGCTCACTCAAGAAGATGCTCAGAGATGCTGGTGCTCTATGGCTTTAG

Predicted protein sequences of Glyma15g10350

Limit To All Plant Sequences

>Glyma15g10350.1   sequence type=predicted peptide   gene model=Glyma15g10350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERITKLASQKAVVIFSKSSCGMSHAIKRLFYEQGVGPAIYELDEDTRGKEMEWALLRLGCNPSVPAVFVGGKFVGSANTVMTLHLNGSLKKMLRDAGALWL*

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