Glyma15g10340 - SoyBase

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Report for Sequence Feature Glyma15g10340

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7491607
stop:	7492391
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18600	AT	Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein \| chr5:6183466-6183774 REVERSE LENGTH=102	SoyBase	E_val: 2.00E-55	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0008794	GO-mf	Annotation by Michelle Graham. GO Molecular Function: arsenate reductase (glutaredoxin) activity	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
KOG1752	KOG	Glutaredoxin and related proteins	JGI		ISS
PTHR10168	Panther	GLUTAREDOXIN	JGI		ISS
PF00462	PFAM	Glutaredoxin	JGI		ISS
UniRef100_G7IQ03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Monothiol glutaredoxin-S2 n=1 Tax=Medicago truncatula RepID=G7IQ03_MEDTR	SoyBase	E_val: 3.00E-59	ISS
UniRef100_I1MF53	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF53_SOYBN	SoyBase	E_val: 2.00E-68	ISS

Expression Patterns of Glyma15g10340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10340

Paralog	Evidence	Comments
Glyma13g28750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g096600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10340

Limit To All Plant Sequences

>Glyma15g10340.1   sequence type=CDS   gene model=Glyma15g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGGGTGACACAGATGGCATCAGAGAGGCCAGTGGTGATATTCAGCAGAAGTTCATGCTGCATGTGCCACACCATCAAAACCCTCTTCAGTGACTTTGGAGTGCATCCAAATGTTCATGAACTTGATGAGATACCAAGAGGGAAGGACATTGAGCAAGCTCTTTCAAGGCTAGGGTGCAGCCCCTCTGTGCCTGCTGTGTTCATTGGTGGTGAGCTTGTTGGTGGAGCCAATGAAGTCATGAGCCTTCACCTTAACCGCTCCTTGATCCCTATGCTTAGGAGAGCAGGAGCTCTTTGGGTTTAA

Predicted protein sequences of Glyma15g10340

Limit To All Plant Sequences

>Glyma15g10340.1   sequence type=predicted peptide   gene model=Glyma15g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRVTQMASERPVVIFSRSSCCMCHTIKTLFSDFGVHPNVHELDEIPRGKDIEQALSRLGCSPSVPAVFIGGELVGGANEVMSLHLNRSLIPMLRRAGALWV*

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