SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18570 | AT | Annotation by Michelle Graham. TAIR10: GTP1/OBG family protein | chr5:6171839-6174823 REVERSE LENGTH=681 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0016556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA modification | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009706 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1489 | KOG | Predicted GTP-binding protein (ODN superfamily) | JGI | ISS | |
| PTHR11702 | Panther | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR11702:SF3 | Panther | GTP-BINDING PROTEIN, GTP1/OBG-FAMILY | JGI | ISS | |
| PF01018 | PFAM | GTP1/OBG | JGI | ISS | |
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| PF09269 | PFAM | Domain of unknown function (DUF1967) | JGI | ISS | |
| UniRef100_G7IPZ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTPase obg n=1 Tax=Medicago truncatula RepID=G7IPZ3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BD12 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BD12 related cluster n=1 Tax=unknown RepID=UPI000233BD12 | SoyBase | E_val: 0 | ISS |
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Glyma15g10260 not represented in the dataset |
Glyma15g10260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g28800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g095700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g10260.2 sequence type=CDS gene model=Glyma15g10260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCGCTCGTCGCAATGGGAACCGCAGCAGCAAAATCCCAAACCCTAAGTTTCAGAAACCAGTCCTCCCCGTCCCCGGTGGCGAATCCACCACCTACACTCGCCTCCTGCTCCCTCCCCTCTCTCCTCTCCCGAAATCAAGCTCTCCGAAACGGCGCCACCGGTCACCCGCTTCCTCCGCAATCGAAAACGACCCAACCGAACCTGAAAGCGACGGCGAGTACGAGTTTTCGGGAGACGAGAATGTGGTCAAAGGCGAGGAAGAGACTCCGAGTGTGAAGGAGAAGTCTGTGCCGGCGGTGATGCGGTCTTTCGACCGGGCGAAGATATATGTGAAGGCAGGGGACGAGGGGAACGGCGTGGTAGCGTTCCGGCGGGAGAAGTACGTGGCGGTGGGGGGGCCGTCGGGGGGCGACGGAGGTAGGGGTGGCGACGTGTACGTGGAGGTCGACGGGGCGATGAACTCGCTTCTGCCGTTTCGGAACAGCGTGCATTTCCGGGCAGAGAGAGGGGGCCACGGGCATGGGAGCATGCAGAGTGGGGCAAAAGGGGAAGATGTGGTGGTGAAGGTGCCCCCTGGAACGGTTGTTCGAATGAGTGGCAAGAATAATGTGTTGTTGGTGTATCCGGGACATAAAGGGTTGCTGTTGCCAGGCGGTAGAGGGGGAAGAGGGAATGCTTCGTTCAAGTCAGGGACTATAAGGTGGTTGGAGTTAGAACTCAAGCTGGTTGTGGATGTTGGTATAGTTGGTGCTCCAAATGCGGGGAAAAGTACACTTTTGAGTGTTGTTTGTGCTGCCAAGCCGGCTGTGGCTAATTATCCTTTTACAACTCTGCTTCCCAATCTTGGTGTTGTTTCCTTTGACTATGATTCAACCATGGTAGTGGCAGACCTTCCAGGTCTGCTTGAAGGGGCACATCGAGGTTTTGGTTTAGGCCATGAGTTTCTACGACACACTGAAAGGTGTGCTTCCCTGGTACATGTTGTTGACGTTTCGTCACCGCTGCCAGATCTTGAGTTTGATGCAGTTTGTCTAGAGCTGAAGCTTTTTAATCCTAAACTTGCTGAGAAGCCTTATGTAGTTGCTTTTAACAAAATGGATCTTCCAGAAGCATATGAAAACTGGAAATCCTTCAAAGAAAAGTTGCAATCTCATGGGATCACACCTTTTTGTATGAGTGCTGTCAAAAGGGAAGGTACTCATGAAGTTATCTGTGCTGCTTATGAGCTTTTGCGTAAAAGTAACAAGACAAGGTGGAATATGAAGGTAATAATATATGGAGGAGATATGGTAAACTTGAACCATGTCGCTGTTGCAGTAAAGAAGCTGCGGAATGCATCCATTAGTGATTTTGAGATTTGTCATGACAGTGATTCAAATATTTGGCATAGAAGATTCCAACGTGTTCTTGAGGCTTGTGGTGTGTACAAGTCTCTCATGAAACTTGGTGTAAAGGAAGGGGACACAGTAATTGTTGGAGAGATGAAGAAGGTATGGCATGACTCGTCTGACAATTCTGGTGTATCTAGGATGAAGAAAATGTCCACGGATTCATTTAAATGGGCTGAATGGAAGTAA
>Glyma15g10260.2 sequence type=predicted peptide gene model=Glyma15g10260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high FARRNGNRSSKIPNPKFQKPVLPVPGGESTTYTRLLLPPLSPLPKSSSPKRRHRSPASSAIENDPTEPESDGEYEFSGDENVVKGEEETPSVKEKSVPAVMRSFDRAKIYVKAGDEGNGVVAFRREKYVAVGGPSGGDGGRGGDVYVEVDGAMNSLLPFRNSVHFRAERGGHGHGSMQSGAKGEDVVVKVPPGTVVRMSGKNNVLLVYPGHKGLLLPGGRGGRGNASFKSGTIRWLELELKLVVDVGIVGAPNAGKSTLLSVVCAAKPAVANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCASLVHVVDVSSPLPDLEFDAVCLELKLFNPKLAEKPYVVAFNKMDLPEAYENWKSFKEKLQSHGITPFCMSAVKREGTHEVICAAYELLRKSNKTRWNMKVIIYGGDMVNLNHVAVAVKKLRNASISDFEICHDSDSNIWHRRFQRVLEACGVYKSLMKLGVKEGDTVIVGEMKKVWHDSSDNSGVSRMKKMSTDSFKWAEWK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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