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Report for Sequence Feature Glyma15g10201

Feature Type:gene_model
Chromosome:Gm15
Start:7414077
stop:7418087
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g10201
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17080AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L18ae family | chr1:5840458-5841536 REVERSE LENGTH=154 SoyBaseE_val: 7.00E-41ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR10052Panther 60S RIBOSOMAL PROTEIN L18A JGI ISS
PTHR10052:SF2Panther 60S RIBOSOMAL PROTEIN L18A, PLANT JGI ISS
UniRef100_I3NMN2UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L18aA n=1 Tax=Hevea brasiliensis RepID=I3NMN2_HEVBR SoyBaseE_val: 1.00E-41ISS
UniRef100_I3T9B4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3T9B4_LOTJA SoyBaseE_val: 2.00E-46ISS

Expression Patterns of Glyma15g10201
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g10201 not represented in the dataset
Glyma15g10201 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g10201 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g095200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g10201
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g10201
>Glyma15g10201.1   sequence type=CDS   gene model=Glyma15g10201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCCCAAGATTTCTCCGATGAACGAGGATGGGAAGAACAGAGGAATCGGAATAGCCACCGAAAACCCTTATTATGGAACCTTTCAAGGCGTCGCTAACCACTATCCTCCTCAACACCAACAACCACCCGTTCCCTACGCTAATTATTACCAACGACAAGGATACCACGTCGTTCCAGTTTATGCCGTTGCTGAAGGAAGGCCTGTGAGAGAACGTCGTCTTCCTTGCTGTGGACTTAGTCTGGGTTGGTTCTTGTTTATAATGGGTTGGTTTCTTGGTGGTGTTCCCTGGTACGTTGGCACTTTCATTCTAATGTTTGTACATATGGATTGCCGAGAAAAGCCTGGATTGATTGCATGCGCAGTTGCTTCCTTCGTTACTGTGATTGTTCTTGCCCTTGGTGTCACACAAGGAGATCTTGGGAGGTTGACATCCTTTTGA
Predicted protein sequences of Glyma15g10201
>Glyma15g10201.1   sequence type=predicted peptide   gene model=Glyma15g10201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPKISPMNEDGKNRGIGIATENPYYGTFQGVANHYPPQHQQPPVPYANYYQRQGYHVVPVYAVAEGRPVRERRLPCCGLSLGWFLFIMGWFLGGVPWYVGTFILMFVHMDCREKPGLIACAVASFVTVIVLALGVTQGDLGRLTSF*






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