Glyma15g10180 - SoyBase

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Report for Sequence Feature Glyma15g10180

Feature Type:	gene_model
Chromosome:	Gm15
Start:	7402495
stop:	7405219
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g10180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34500	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 710, subfamily A, polypeptide 1 \| chr2:14539712-14541199 REVERSE LENGTH=495	SoyBase	E_val: 0	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0000249	GO-mf	Annotation by Michelle Graham. GO Molecular Function: C-22 sterol desaturase activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0157	KOG	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies	JGI		ISS
PTHR24286	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24286:SF14	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_I1MF42	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF42_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2MIZ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 monooxygenase CYP710A15 n=1 Tax=Medicago truncatula RepID=Q2MIZ9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g10180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g10180

Paralog	Evidence	Comments
Glyma13g28860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g10180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g095000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g10180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g10180

Limit To All Plant Sequences

>Glyma15g10180.1   sequence type=CDS   gene model=Glyma15g10180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGCTCTCACACTGGCATCCCTCTTGGCCTCTTTCTCCTTCACGGAGCTTACCTCGTACCTGGCATGCTTCATCCTCCTCCTGCTTCTCCTGGAACAGATCTCGTACATAGTCAAAAAAGGTTCCATCCCAGGACCCTCCTTGGTCCTTCCCTTCCTAGGCAACGCAATCCCATTGGTCCGAAACCCTACCAAATTCTGGGACCTTCAATCCTCTTTCGCTAAATCCACTCCCTTGGGCTTCTCCGCCAACTACATCATCGGCAACTTCATCGTCTTCATCCGAGACTCCGAACTCTCCCACAAAATCTTCTCCAATGTCAGGCCCGACGCCTTCCGCTTAGTGGGCCACCCCTTCGGGAAAAAACTATTCGGCGAACACAACCTCATCTACATGACTGGCCAAGACCACAAAAATCTCCGCCGTCGGATCGCCCCCAATTTCACCCCTAAAGCCCTCTCCACCTACACCTCGCTCCAGCAGATTATCATCCTCAACCACCTCAAGTCATGGGTCAGTCAGGCCCAAGCCCAAGGCTCCTATTCTATTCCGCTCCGCATCCTGGCTCGTGACATGAACCTCGAGACCTCCCAGACCGTCTTCGTGGGCCCGTACTTGGGCCTCAAAGCCCGAGAGCGATTTGAGAGGGATTACTTTCTATTCAACGTGGGGCTAATGAAGCTGCCGTTTGACTTCCCCGGCACCGCGTTTCGGAACGCGAGGCTCGCCGTGGACCGGCTTGTCGTAGCCCTAGGCACGTGCACCGAGATGAGCAAAACGAGGATGCGGACATTAGGGGAAGAGCCTTCGTGCCTCATCGATTACTGGATGCAGGACACGCTCAGGGAAATCGAGGAGGCCAAGCTCGCCGGAGAAACGCCGCCGCCGTTCTCCACCGATGCCGAGATCGGTGGCTACCTCTTCGACTTCCTCTTCGCGGCGCAGGACGCGTCCACTTCGTCGCTTCTGTGGGCGGTGGCTTTGCTCGAATCGCACCCGGAGGTGCTCGCGAAGGTGAGGGCCGAAGTCGCCGGAATCTGGTCGCCGGAGTCGGATGAACTGATTACTGCCGATATGCTTAGGGAGATGAAGTACACTCAGGCGGTGGCACGTGAGGTGGTGAGGTTCCGGCCGCCGGCGACGCTGGTGCCGCACGTCGCGGCGGAAAGGTTTCCGTTGACGGAATCGTACACGATACCAAAAGGAGCTATCGTGTTTCCGTCGGCGTTCGAGTCGTCGTTTCAAGGGTTCACTGAACCGGACCGGTTTGACCCGGACCGGTTCTCGGAGGAGAGACAGGAGGACCAAATATTTAAGAGAAACTTTCTCGCGTTCGGGGCTGGGCCCCACCAGTGTGTAGGTCAAAGGTACGCGTTGAATCATCTTGTTCTCTTCATCGCCTTGTTCACAACGTTGATCGATTTCAAGAGGGACATATCCGACGGCTGTGATGAGATTGCGTACGTGCCCACCATTTGCCCCAAAGACGACTGCAGGGTATTTCTGTCCAAACGGTGCGCACGGTATCCTTCTTTTCCTTCGGTAGAGGACCTCGTCAAATGA

Predicted protein sequences of Glyma15g10180

Limit To All Plant Sequences

>Glyma15g10180.1   sequence type=predicted peptide   gene model=Glyma15g10180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKALTLASLLASFSFTELTSYLACFILLLLLLEQISYIVKKGSIPGPSLVLPFLGNAIPLVRNPTKFWDLQSSFAKSTPLGFSANYIIGNFIVFIRDSELSHKIFSNVRPDAFRLVGHPFGKKLFGEHNLIYMTGQDHKNLRRRIAPNFTPKALSTYTSLQQIIILNHLKSWVSQAQAQGSYSIPLRILARDMNLETSQTVFVGPYLGLKARERFERDYFLFNVGLMKLPFDFPGTAFRNARLAVDRLVVALGTCTEMSKTRMRTLGEEPSCLIDYWMQDTLREIEEAKLAGETPPPFSTDAEIGGYLFDFLFAAQDASTSSLLWAVALLESHPEVLAKVRAEVAGIWSPESDELITADMLREMKYTQAVAREVVRFRPPATLVPHVAAERFPLTESYTIPKGAIVFPSAFESSFQGFTEPDRFDPDRFSEERQEDQIFKRNFLAFGAGPHQCVGQRYALNHLVLFIALFTTLIDFKRDISDGCDEIAYVPTICPKDDCRVFLSKRCARYPSFPSVEDLVK*

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