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Report for Sequence Feature Glyma15g10100

Feature Type:gene_model
Chromosome:Gm15
Start:7318943
stop:7319777
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g10100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G46230AT Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF538 | chr5:18742593-18743024 REVERSE LENGTH=143 SoyBaseE_val: 2.00E-50ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF04398PFAM Protein of unknown function, DUF538 JGI ISS
UniRef100_Q2R1S6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R1S6_ORYSJ SoyBaseE_val: 6.00E-46ISS
UniRef100_UPI000233BD0CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BD0C related cluster n=1 Tax=unknown RepID=UPI000233BD0C SoyBaseE_val: 6.00E-116ISS

Expression Patterns of Glyma15g10100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g10100 not represented in the dataset
Glyma15g10100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g10100 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g094200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g10100
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g10100
>Glyma15g10100.2   sequence type=CDS   gene model=Glyma15g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGCAAAAATAGAGCACCACCGCGAGGAAGCTGAGATCTACGAGGGCGAAGCGGTGTGCACGCAAAAGTCACGTCTCCTCTTGGACGAGATTCTCCTCCCAAGAGGCTTGCTCCCGCTGGAGAACATCGTGGAGATGGGTTACAACCGCACCACGGGGTTCGTGTGGCTGAAGCAGAGGCACAAGAAGGAGCACCGCTTCGCCACCATCGGACGCACCGTCTCGTACGCAACGGAGGTGACGGCGTTCGTGGAGGAGCACCGCATGCGGAGGGTGACGGGTGTCAAGACCAAAGAGCTCTTCATATGGGTCAGCATCTCCGAGATCTTCGTGGATGACCCTGCTTCCGGTAAGATAACGTTCGCCAACTCCTCTGGGATTGCAAGGTCTTTTCCTCTCTCAGCATTCTCTCTCCAAGAGGAACATCAACAACAACAGCAAGAACATGATCATGCAGAAACGTACCTATCAACCAAATCATGA
Predicted protein sequences of Glyma15g10100
>Glyma15g10100.2   sequence type=predicted peptide   gene model=Glyma15g10100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAKIEHHREEAEIYEGEAVCTQKSRLLLDEILLPRGLLPLENIVEMGYNRTTGFVWLKQRHKKEHRFATIGRTVSYATEVTAFVEEHRMRRVTGVKTKELFIWVSISEIFVDDPASGKITFANSSGIARSFPLSAFSLQEEHQQQQQEHDHAETYLSTKS*






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