SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46220 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF616) | chr5:18738827-18741964 FORWARD LENGTH=462 | SoyBase | E_val: 0 | ISS |
| GO:0006672 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ceramide metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PTHR12956 | Panther | ALKALINE CERAMIDASE-RELATED | JGI | ISS | |
| PTHR12956:SF13 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04765 | PFAM | Protein of unknown function (DUF616) | JGI | ISS | |
| UniRef100_I1MF33 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF33_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9FL38 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dbj|BAA96145.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FL38_ARATH | SoyBase | E_val: 7.00E-143 | ISS |
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Glyma15g10090 not represented in the dataset |
Glyma15g10090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g094100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g10090.1 sequence type=CDS gene model=Glyma15g10090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGGCTAATAAGAACTTCTAAACCTCTTATCTTCCACTCAAAGCTCCTCTGTTTTTCTCTGTTCTATCTCTTCACCACTCTGTTCCTTGCTCTCTACACCTCTCTGTCCCAATCCAAATGTTTCTTCCGATCGTCCCCTTCGGATCCCGTTCAGAATTCTCTCTTCTCTTACCCTTCTTCCTATGGGGAGCACAAGTACGCTGTGTCAACCACCCGTTCTACATGTTCTTCCCCTGTTTTCTTTTCAGATTACTCGGATGTTGTGAAGGAGATCAAGAATTGCCGCAATAACAATGTAGGCTATTCAGGGGCTCTGCGGTATATGCAAGGGAATTTGGATAGTTTTGGGGGGAATCTCAACACCCTTTCGAGGTTTTCTTATTTTGATCACCAAAATGATAGCACGGAAGTTCCATGCGGATTTCTGAAGAAATTTCCAATTAGTGATTCCGATCGAATTGCGATGGAGAAGTGTGACAGTGTGGTTGTGGTTTCAGCAATCTTCAATGATCATGATAAAATTCGTCAACCGAAGGGCCTTGGGTCCAATACATTGCAAGAAGTGTGTTTTTTTATGTTTGTAGATGATGTTACCCTCAAAGGTCTTGAACATCATGGATTGGTTTCAATAAATTCAAGAGAATACAAGATAGGTGTATGGAGGATTGTGAAGGTTGCAAAAGAGAATTTGTATCAGAACCCAGCAATGAATGGGGTTATACCAAAGTATTTAGTCCATAGGTTATTCCCACATTCCCACTTCAGCATTTGGATAGACGCAAAGTTGCAACTAATGGTTGATCCGTTATTGTTGATTCATTCTCTTGTTATATCTAAAAATGTAGACATGGCTATATCAAAACACCCTTATTATGTTCATACCATGGAAGAAGCAATGGCAACTGCAAGATGGAAGAAATTGTTGGATGTCAACGCCTTGAAGGAACAAATGGAGACATACTGTGAAAATGGATTGCAACCATGGAGTCCCAACAAACAACCCTATGTGTCAGATGTACCAGATAGTGCTTTGATATTAAGGAGGCATGGACTTGGCAGTAACCTCTTCTCCTGCCTCATATTCAATGAGTTGCAGGCATTTAACCCAAGAGACCAATTGCCTTTTGCATTTGTTAGAGATCACATGAAGCCCAACCTGAAGCTGAACATGTTTGAGGTAGAAGTTTTTGAACAGGTGGCAGTGGAGTACAGACACAATCTCAAGAGCAGTGATGGGACCACTGTGAAGAAAGTGTTCAGTTCAGGAAGAACCAAAAGGGCACACCCTGATTTGTTGTATGTGAATGGAAGTTGTTGCAGCAAGTGCCAAAAGTATCTTTCTATAATGTGGGGGGAATCATCAAATGATTAA
>Glyma15g10090.1 sequence type=predicted peptide gene model=Glyma15g10090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRLIRTSKPLIFHSKLLCFSLFYLFTTLFLALYTSLSQSKCFFRSSPSDPVQNSLFSYPSSYGEHKYAVSTTRSTCSSPVFFSDYSDVVKEIKNCRNNNVGYSGALRYMQGNLDSFGGNLNTLSRFSYFDHQNDSTEVPCGFLKKFPISDSDRIAMEKCDSVVVVSAIFNDHDKIRQPKGLGSNTLQEVCFFMFVDDVTLKGLEHHGLVSINSREYKIGVWRIVKVAKENLYQNPAMNGVIPKYLVHRLFPHSHFSIWIDAKLQLMVDPLLLIHSLVISKNVDMAISKHPYYVHTMEEAMATARWKKLLDVNALKEQMETYCENGLQPWSPNKQPYVSDVPDSALILRRHGLGSNLFSCLIFNELQAFNPRDQLPFAFVRDHMKPNLKLNMFEVEVFEQVAVEYRHNLKSSDGTTVKKVFSSGRTKRAHPDLLYVNGSCCSKCQKYLSIMWGESSND*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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