Report for Sequence Feature Glyma15g10000
Feature Type: gene_model
Chromosome: Gm15
Start: 7226027
stop: 7228510
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g10000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G30090 AT
Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr1:10559746-10560942 REVERSE LENGTH=398
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24411 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24411:SF196 Panther
JGI ISS
PF00646 PFAM
F-box domain
JGI ISS
PF01344 PFAM
Kelch motif
JGI ISS
UniRef100_G7IP74 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7IP74_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MF25 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MF25_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g10000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g10000
Paralog Evidence Comments
Glyma13g29040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g10000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g093300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g10000
Coding sequences of Glyma15g10000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g10000.1 sequence type=CDS gene model=Glyma15g10000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGCGTGTTAGATTTTCATCTCAGCAGGCACCAGTACACAAGCTAGGAGATCCTCAAATGACATTATCTCCCAAGTTTAGGTTAGCTGTGATCCAATCTTCTTTGGCAAATCCATCACCTGAGTTAGAGCTTTCTCTCAGAGAAGAACCCTTAATTCCTGGCCTTCCTGATGATGTTGCTCTCAATTGTCTTCTCCGGCTTCCGGTTCAGAGTCACTCATCTTGTAGAGCTGTGTGCAAGAGGTGGCATATGCTACTTGGTAACAAAGAGAGGTTTTTCACCAATAGGAAGCAATTTGGTTTGAAAGATCCTTGGCTTTTTGTTTTTGCCTACCACAAGTGCACTGGGAAGATCAAGTGGCAGGTGCTTGACCTCACACACTTTTCTTGGCACACTATCCCTGCAATGCCTTGTAAGGACAAGGTTTGCCCTCATGGTTTTAGGTGTGTTTCGATCCCCTGCGACGGCACACTGTTTGTTTGTGGTGGCATGGTCTCTGATGTGGATTGCCCTCTTGACTTGGTGTTGAAATATGAGATGCAGAAGAATAGGTGGACTGTAATGAATAGGATGATCACTGCCAGGTCATTTTTTGCCAGTGGAGTGATTGATGGGATGATATATGTAGCTGGGGGAAATAGTACTGATCTTTATGAGCTTGATTCTGCTGAGGTGTTGGATCCTCTCAATGGGAGTTGGCGCCCTATTGCCAACATGGGAACAAATATGGCATCTTATGATGCTGCAGTTCTCAATGGGAAACTTCTGGTGACTGAAGGGTGGTTGTGGCCTTTTTATGTCTCTCCAAGAGGCCAGGTCTATGATCCAAGAACTAATAACTGGGAAAATATGGCTGTTGGACTCAGAGAAGGGTGGACAGGTTCGAGTGTGGTTGTTTACGGGCACTTATTTGTTGTTTCTGAGCTCGAAAGAATGAAGCTAAAGGTCTATGACCCTGAAACCGATTCCTGGGAAGCCATAGAAGGGCTTCCTTTGCCCGAGCAAATACGCAAGCCTTTTGCTGTGAATGCTTGTGATTGTCATATTTATGTTGTGGGTCAAAATCTTGTGGTTGGTGTTGGCCATATCACTAGACTGAACCCAAAAGAAAGTTGTAAGGAAAAATGGAACTTCAGTGTTCGATGGCATGTAATAGATGCACCAGAAAGTGTGTCTGATCTGACTCCTTCAAGCTCTCAGGTGCTGTTTGCTTAG
Predicted protein sequences of Glyma15g10000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g10000.1 sequence type=predicted peptide gene model=Glyma15g10000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQRVRFSSQQAPVHKLGDPQMTLSPKFRLAVIQSSLANPSPELELSLREEPLIPGLPDDVALNCLLRLPVQSHSSCRAVCKRWHMLLGNKERFFTNRKQFGLKDPWLFVFAYHKCTGKIKWQVLDLTHFSWHTIPAMPCKDKVCPHGFRCVSIPCDGTLFVCGGMVSDVDCPLDLVLKYEMQKNRWTVMNRMITARSFFASGVIDGMIYVAGGNSTDLYELDSAEVLDPLNGSWRPIANMGTNMASYDAAVLNGKLLVTEGWLWPFYVSPRGQVYDPRTNNWENMAVGLREGWTGSSVVVYGHLFVVSELERMKLKVYDPETDSWEAIEGLPLPEQIRKPFAVNACDCHIYVVGQNLVVGVGHITRLNPKESCKEKWNFSVRWHVIDAPESVSDLTPSSSQVLFA*