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Report for Sequence Feature Glyma15g09910

Feature Type:gene_model
Chromosome:Gm15
Start:7142473
stop:7153401
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g09910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18390AT Annotation by Michelle Graham. TAIR10: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 | chr4:10163212-10164309 REVERSE LENGTH=365 SoyBaseE_val: 6.00E-72ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006417GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of translation SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0045962GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of development, heterochronic SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03634PFAM TCP family transcription factor JGI ISS
UniRef100_J7F3K5UniRef Annotation by Michelle Graham. Most informative UniRef hit: TCP transcription factor n=1 Tax=Camellia sinensis RepID=J7F3K5_CAMSI SoyBaseE_val: 1.00E-132ISS
UniRef100_UPI000233BBABUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BBAB related cluster n=1 Tax=unknown RepID=UPI000233BBAB SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g09910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g09910
ParalogEvidenceComments
Glyma13g29160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g09910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g092500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g09910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g09910
>Glyma15g09910.2   sequence type=CDS   gene model=Glyma15g09910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGATGAGATTCAAGCATGTAAGTTCCCTAGAGTTGGAAATGGTAGGAGTAGTGACCAATACCAAGAGGAGGAAGAAGAGGGTGACCTAAGAAGAAAAGGTGTTGGTGGTGGTGGTGGAAGTGATGCTAGCACAAACCACTTCCACCAAAGTAGTTGGCACTACTCTTCTAGAATCATAAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAAGTGATGACCTCAAAAGGGTTAAGAGACAGAAGGGTTAGGCTCTCTGTGACCACAGCTATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTACGACCAACCTAGCAAAGCTGTGGAGTGGCTAATCAAAGCTGCTTCAGAAGCTATCTCTGAGCTTCCTTCTCTCAACAACCCTTTCCCTGATACCCCTAAGCAGCCTAGTGATGAGAAAAGGCCTACCAGTGGTGGTGGTCAACAACAACAACAACAAGGCTTTGATGATGCAGATGGAGACACAAATTACCAACAAAACCAAAGCCAGAATCTTTCTCTCTCCAAGTCTGCTTGTAGCAGCACTTCCGAGACAAGCAAGGGCTCAGGCTTGTCCCTCTCAAGGTCTGAGATCCGTGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGAGAGAGCAGCAAAAGAGAAGGAGAAGGAGAAAGAGAAAGAGAGTGATTTTAACATTGCACACCACCATCACCACCACAATGTGAACAACATGTCTCACACTGCTTCCTTCACTGAGCTTCTCACTGGTGGGATTGGGAGCACGGTAACAGTTAACCCCAACACAACAACAACAACAACAACAACAGCAACAAGTCCTAATGGATCATCGGTTCATCAGATCCATGAGGGTCATGATCATGAGGCTAATCTATTCAACAAGGGAAGTCAACAACAGCAACAGCAACAACATCACCATTGGTCTCAAACAGTGACACCTATGGACTACTTCAGCGCAGGCCTCTTGGTAGGACCTTCATCATCTGCAAGTACTCAACAACACCAATCTTCAGGACAGTTCCAACTGGGACATGGACATGCACATGCACATGCTCTTTCAATCTCACCATTTAGTGGAGAAAACCACTCGGAGCAAATGCAGCATTTTTCCTTCATGCCAGACCATCTCAACAACATGCCATCTTCTGCTGCTTCTGCTTCTCAACACAGCGAGGGTGACAATAACAACTACAACCTCAACTTCAGCATCTCTTCGTCGGGCCTTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTTCCTCGTTTTTGCCTCTCCTTCAGAGGTTTCAACCTTTAGTCGACGGATCCTCCAATCTACCTTTCTTTATAGGAGCTGCTCCTCCTTCTTCTGCTCCTCCAACCATGGACAACAACAACAGCAACAACAGCAACAACCATCACCACCTTCAGTTCTCACCCATCTTTGATGGCCGCTTGCAACTTTGCTATGGCGATGGAACAAGGCAGCATTCTGATCACAAGGGGAAGGGAAAGAACTAA
Predicted protein sequences of Glyma15g09910
>Glyma15g09910.2   sequence type=predicted peptide   gene model=Glyma15g09910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDEIQACKFPRVGNGRSSDQYQEEEEEGDLRRKGVGGGGGSDASTNHFHQSSWHYSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASEAISELPSLNNPFPDTPKQPSDEKRPTSGGGQQQQQQGFDDADGDTNYQQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARERAAKEKEKEKEKESDFNIAHHHHHHNVNNMSHTASFTELLTGGIGSTVTVNPNTTTTTTTTATSPNGSSVHQIHEGHDHEANLFNKGSQQQQQQQHHHWSQTVTPMDYFSAGLLVGPSSSASTQQHQSSGQFQLGHGHAHAHALSISPFSGENHSEQMQHFSFMPDHLNNMPSSAASASQHSEGDNNNYNLNFSISSSGLAGYNRGTLQSNSPSSSFLPLLQRFQPLVDGSSNLPFFIGAAPPSSAPPTMDNNNSNNSNNHHHLQFSPIFDGRLQLCYGDGTRQHSDHKGKGKN*






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