Glyma15g09630 - SoyBase

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Report for Sequence Feature Glyma15g09630

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6897627
stop:	6899742
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g09630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18040	AT	Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 4E \| chr4:10016724-10018151 REVERSE LENGTH=235	SoyBase	E_val: 1.00E-88	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0009615	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to virus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000339	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA cap binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1670	KOG	Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins	JGI		ISS
PTHR11960	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED	JGI		ISS
PF01652	PFAM	Eukaryotic initiation factor 4E	JGI		ISS
UniRef100_C6ZJZ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 4E n=1 Tax=Glycine max RepID=C6ZJZ3_SOYBN	SoyBase	E_val: 1.00E-122	ISS
UniRef100_I1MEZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEZ1_SOYBN	SoyBase	E_val: 2.00E-174	ISS

Expression Patterns of Glyma15g09630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g09630

Paralog	Evidence	Comments
Glyma13g29420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g09630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g089800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g09630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g09630

Limit To All Plant Sequences

>Glyma15g09630.2   sequence type=transcript   gene model=Glyma15g09630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTGTGTTTAAAAATGCCGTATCAGTGAAATACTAACCAACGCGTCTATACTATTTGCATCTCATAAAACACAGAGCTGAGAAAGGAAGAAAAAAAGCGTTTGTGAGTGTGAGAGAGTCATAACAATGGTTGTGGAAGATGCCCAAAAATCAGCCATCACGGAGGACCAAAACCCTAGCAGGGTCGCCAACGACAACAACGACGACGAAGATCTCGAAGAGGGGGAGATCCCCGACGACGGTGACGACGGCGCCTCCGCCACATCAAAGCCTCCGTCCGCCCTCGTCCGCAACCCCCACCCTCTCGAGAATTCCTGGACCTTCTGGTTCGACAACCCTTCCGCCAAGTCCAAACAAGCTGCATGGGGCAGCTCCATCCGACCCATCTACACTTTCGCCACCGTCGAAGAGTTTTGGAGCATTTACAATAACATTCACCACCCGAGCAAGTTGGGTGTGGGGGCGGACTTTCATTGCTTCAAGCACAAGATTGAGCCCAAGTGGGAGGATCCTATCTGCGCTAATGGGGGAAAGTGGACTATGACCTTCCAAAGGGGAAAATCTGATACCAGTTGGTTATATACGTTGTTGGCAATGATTGGAGAACAGTTTGATCACGGAGATGAAATATGCGGAGCTGTTGTGAATGTCAGAAGTAGGCAGGAAAAAATTGCTATTTGGACTAAGAACGCTTCAAATGAAGCTGCTCAGGTGAGCATTGGAAAGCAGTGGAAGGAGTTTCTTGATTACAATGACACAATTGGCTTTATATTTCATGAGGATGCAAAGAAGCTTGACAGAGGTGCTAAAAATAAATACGTTGTATGAAGTTTATAGCGTTCTTAACTGGAAGCAAATGAAGGAATGCAGTACATTCCTTGAATGAAGTCGCATTTTGATGCCTGGTCTTTCCTCTCCTACATGTAGCTGAGCTTCTTAGCCCTTTTGACCTCATCTTATTAGTACTTTCATATTCGATGTGGACGGAGAATATTTCATACTGAGATGTTTCATCAATAATATAGAGTGATTTAGCTAATTGCTTCTACCATTCGATTG

Coding sequences of Glyma15g09630

Limit To All Plant Sequences

>Glyma15g09630.1   sequence type=CDS   gene model=Glyma15g09630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGGAAGATGCCCAAAAATCAGCCATCACGGAGGACCAAAACCCTAGCAGGGTCGCCAACGACAACAACGACGACGAAGATCTCGAAGAGGGGGAGATCCCCGACGACGGTGACGACGGCGCCTCCGCCACATCAAAGCCTCCGTCCGCCCTCGTCCGCAACCCCCACCCTCTCGAGAATTCCTGGACCTTCTGGTTCGACAACCCTTCCGCCAAGTCCAAACAAGCTGCATGGGGCAGCTCCATCCGACCCATCTACACTTTCGCCACCGTCGAAGAGTTTTGGAGCATTTACAATAACATTCACCACCCGAGCAAGTTGGGTGTGGGGGCGGACTTTCATTGCTTCAAGCACAAGATTGAGCCCAAGTGGGAGGATCCTATCTGCGCTAATGGGGGAAAGTGGACTATGACCTTCCAAAGGGGAAAATCTGATACCAGTTGGTTATATACGTTGTTGGCAATGATTGGAGAACAGTTTGATCACGGAGATGAAATATGCGGAGCTGTTGTGAATGTCAGAAGTAGGCAGGAAAAAATTGCTATTTGGACTAAGAACGCTTCAAATGAAGCTGCTCAGGTAACATTCCTATTTATTCAGTTAGTTTTGGTTTGTTTCTTTTTTTCCCTTTGTTTACTATTGTGCTGCAGGTGGGAGGGAGTGAGGGAGATTTATCTAGCCTCTTCAATAATGTTGTGA

>Glyma15g09630.2   sequence type=CDS   gene model=Glyma15g09630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGGAAGATGCCCAAAAATCAGCCATCACGGAGGACCAAAACCCTAGCAGGGTCGCCAACGACAACAACGACGACGAAGATCTCGAAGAGGGGGAGATCCCCGACGACGGTGACGACGGCGCCTCCGCCACATCAAAGCCTCCGTCCGCCCTCGTCCGCAACCCCCACCCTCTCGAGAATTCCTGGACCTTCTGGTTCGACAACCCTTCCGCCAAGTCCAAACAAGCTGCATGGGGCAGCTCCATCCGACCCATCTACACTTTCGCCACCGTCGAAGAGTTTTGGAGCATTTACAATAACATTCACCACCCGAGCAAGTTGGGTGTGGGGGCGGACTTTCATTGCTTCAAGCACAAGATTGAGCCCAAGTGGGAGGATCCTATCTGCGCTAATGGGGGAAAGTGGACTATGACCTTCCAAAGGGGAAAATCTGATACCAGTTGGTTATATACGTTGTTGGCAATGATTGGAGAACAGTTTGATCACGGAGATGAAATATGCGGAGCTGTTGTGAATGTCAGAAGTAGGCAGGAAAAAATTGCTATTTGGACTAAGAACGCTTCAAATGAAGCTGCTCAGGTGAGCATTGGAAAGCAGTGGAAGGAGTTTCTTGATTACAATGACACAATTGGCTTTATATTTCATGAGGATGCAAAGAAGCTTGACAGAGGTGCTAAAAATAAATACGTTGTATGA

Predicted protein sequences of Glyma15g09630

Limit To All Plant Sequences

>Glyma15g09630.1   sequence type=predicted peptide   gene model=Glyma15g09630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVEDAQKSAITEDQNPSRVANDNNDDEDLEEGEIPDDGDDGASATSKPPSALVRNPHPLENSWTFWFDNPSAKSKQAAWGSSIRPIYTFATVEEFWSIYNNIHHPSKLGVGADFHCFKHKIEPKWEDPICANGGKWTMTFQRGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRSRQEKIAIWTKNASNEAAQVTFLFIQLVLVCFFFSLCLLLCCRWEGVREIYLASSIML*

>Glyma15g09630.2   sequence type=predicted peptide   gene model=Glyma15g09630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVEDAQKSAITEDQNPSRVANDNNDDEDLEEGEIPDDGDDGASATSKPPSALVRNPHPLENSWTFWFDNPSAKSKQAAWGSSIRPIYTFATVEEFWSIYNNIHHPSKLGVGADFHCFKHKIEPKWEDPICANGGKWTMTFQRGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRSRQEKIAIWTKNASNEAAQVSIGKQWKEFLDYNDTIGFIFHEDAKKLDRGAKNKYVV*

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