Glyma15g09530 - SoyBase

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Report for Sequence Feature Glyma15g09530

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6825591
stop:	6828151
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g09530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29670	AT	Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein \| chr1:10375843-10377717 FORWARD LENGTH=363	SoyBase	E_val: 2.00E-101	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_C6T9R1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T9R1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7L7Z7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7L7Z7_MEDTR	SoyBase	E_val: 1.00E-129	ISS

Expression Patterns of Glyma15g09530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g09530 not represented in the dataset	Glyma15g09530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g09530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g089000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g09530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g09530

Limit To All Plant Sequences

>Glyma15g09530.1   sequence type=CDS   gene model=Glyma15g09530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGTGAAACCAAGTCATGGTTGGTTATGTTTCTTGTTTTCTTGGTTGCTAATTGCATGCAACATTGTGTCCACGGGGTGTCTCAAGTGCCTTGCCTTTTTATCTTTGGGGACTCTATGTCTGATAGTGGAAACAACAATGAACTTCCAACCACTTCAAAATCTAATTTCAGACCATATGGGATCGACTTTCCATTAGGACCAACTGGGAGATATACCAATGGCCGAACAGAAATTGACATAATCACTCAATTTCTGGGATTTGAGAAATTTATCCCACCCTTTGCAAACACTAGTGGTTCAGACATACTTAAAGGTGTTAACTATGCATCAGGTGGATCTGGTATACGCAACGAAACTGGCTGGCATTATGGTGCTGCTATCGGCTTGGGATTACAGTTAGCAAATCACAGAGTCATAGTATCTGAAATTGCTACCAAACTTGGAAGTCCTGACTTAGCTCGACAATACCTTGAAAAATGCTTGTATTATGTGAACATAGGCAGCAATGATTACATGGGCAATTACTTCCTTCCCCCGTTCTACCCAACAAGCACCATTTATACCATTGAGGAGTTTACACAAGTTCTGATTGAAGAGTTATCTCTGAATTTACAGGCTTTACATGACATTGGAGCAAGAAAGTATGCCTTGGCTGGGTTGGGCCTTATAGGATGCACCCCAGGTATGGTGAGTGCTCATGGGACAAATGGATCATGTGCTGAAGAGCAAAATCTCGCTGCATTCAATTTCAATAACAAGCTTAAAGCTCGAGTGGATCAATTCAACAATGATTTCTATTATGCTAATTCCAAATTCATCTTTATAAACACTCAAGCATTGGCCATTGAGCTTCGCGATAAATATGGTTTTCCGGTTCCGGAAACTCCTTGCTGCCTACCGGGATTAACAGGGGAGTGTGTTCCTGATCAAGAGCCGTGCTATAATAGGAATGACTATGTGTTTTTTGATGCTTTCCATCCCACCGAGCAATGGAACCTACTCAATGCATTGACATCTTATAATTCTACCACTAATTCAGCCTTCACTTATCCAATGGATATCAAGCACCTTGTTGATCATGAAATTAAGATGGAATTGGAGCTCACAAATGAGTCCACTTCACAACTTAGTGCCACTGAATAA

Predicted protein sequences of Glyma15g09530

Limit To All Plant Sequences

>Glyma15g09530.1   sequence type=predicted peptide   gene model=Glyma15g09530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACETKSWLVMFLVFLVANCMQHCVHGVSQVPCLFIFGDSMSDSGNNNELPTTSKSNFRPYGIDFPLGPTGRYTNGRTEIDIITQFLGFEKFIPPFANTSGSDILKGVNYASGGSGIRNETGWHYGAAIGLGLQLANHRVIVSEIATKLGSPDLARQYLEKCLYYVNIGSNDYMGNYFLPPFYPTSTIYTIEEFTQVLIEELSLNLQALHDIGARKYALAGLGLIGCTPGMVSAHGTNGSCAEEQNLAAFNFNNKLKARVDQFNNDFYYANSKFIFINTQALAIELRDKYGFPVPETPCCLPGLTGECVPDQEPCYNRNDYVFFDAFHPTEQWNLLNALTSYNSTTNSAFTYPMDIKHLVDHEIKMELELTNESTSQLSATE*

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