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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18950 | AT | Annotation by Michelle Graham. TAIR10: Integrin-linked protein kinase family | chr4:10375685-10378129 FORWARD LENGTH=459 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009966 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of signal transduction | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004712 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0192 | KOG | Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs | JGI | ISS | |
| KOG4214 | KOG | Myotrophin and similar proteins | JGI | ISS | |
| PTHR23257 | Panther | SERINE-THREONINE PROTEIN KINASE | JGI | ISS | |
| PTHR23257:SF89 | Panther | ANKYRIN-KINASE | JGI | ISS | |
| PF00023 | PFAM | Ankyrin repeat | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_B9S8G7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase, putative n=1 Tax=Ricinus communis RepID=B9S8G7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00018C6EC6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018C6EC6 related cluster n=1 Tax=unknown RepID=UPI00018C6EC6 | SoyBase | E_val: 0 | ISS |
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Glyma15g09490 not represented in the dataset |
Glyma15g09490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g29520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g088500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g09490.3 sequence type=transcript gene model=Glyma15g09490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTGTTCCACGTTGGGCCGAACAAAAACAGCGAAACATCGTTCACAAGTGGCTTGCTTGGTCGGACTAGGAAAGTTTTCAAAGCCAAGCAAATACGAGCTTTACCCAATTTTCTTGCTGTTGAATTTTCCACTGTTCAATCTTCAAAATCACATTTTTCTCGATCTTCACCTTCTGGGTTGCTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTTTGTTTTCGCTATGGAATCGAAAAACCCTGCGAGGTTTACGCTGGGGAAGCAGTCGTCGCTTGCCCCAGAACGCCATAACAAAGAAGCAGAGCTCCAAAAAGATGGGGAAGCTGTTGATCAGGGTGTGAGGTTGATGTATTCGGCATTCGAAGGCGATGTGGATGGAATTCGCGAGGCGTTGGAGTCTGGTGTGAGTGTGAATTACAAGGATATTGATAATCGCACTGCTCTTCATGTTGCGGCGTGTGAGGGCTTCACTGATGTTGTTGATTTATTGCTCCAAAAAGGTGCTGAAGTTGACCCCAAAGATCGATGGGGGAGCACGCCACTTGCAGATGCTATTTTTTATAAAAAGAATGACGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCCTTTGATGGCCCCTATGCATGTTAATCATGCGCGTGAAGTCCCAGAGTATGAAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACGAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTAATTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCATGAAAAGAAAAGGAGCTTTGAAACCATCAACAGCTGTGAGATTTGCACTTGACATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCGCCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCCTGTGGGTGCTGCTTTTCTTCAGAACTATCATTATGCACACTTGAAATACCTAAATATCTGAAATGCTGTATTTTCTTATTCGTTGGGCATAAGAGAATATTGTCATTATTGTGACATTTTCCATGTGCTGGACTTTTGCATGCTGATTCATGGTTTTATTTTCTGAAACTGGGAAATTTTTTGTTTTTGTTTATAGGCCGCTATGTGGCTCCTGAAGTTTTCAGACAAGAAGAATATGACACTAAAGTGGATGTATTTTCATTTGCACTAATTCTGCAAGAGATGATTGAAGGCTGCCCTCCTTTTTCTGCAAAGCAAGACGATGAAGTTCCCAAGGTATATGCTGCAAAAGAGCGTCCACCTTTCCAAGCACCAGCCAAGCGTTACTCCCATGGAATTCGAGAATTGATTGAAGAGTGCTGGAATGAGAATCCAGCAAAGCGGCCAACATTTAGGCAAATAATAACAAAGCTGGAGTCCATCTACAACACAATTGGTCACAAAAGACATTGGAAGGTTGTCATCTCTCTTACATTCCCCCCTCCCCTGCATCAGATATTTTTGCTTGCATATGCTTGTTCAAAATTGTGTAGACTGGACTGAATGCTTAATCTCTGTTTATAAATATTTGAAACATGTTTCTGGTTTAATAAAACAAAGAAAAATAATAAAATGATATAACCTAGGAGAGAGCTTGTATGAAAGAATAGAATGACATGCGGCAATTAGGGTTATAACAGAGAACTGTATGATCTTTTTGAATTTTCCAGCTCAGGAATTGTATTCTTGAGAAACAAAAGTGAAAACTCACCACTCCACGGGCAACACTGGTATACAAGTAATTGGGGAGTAAGTAATTATGGGATGACATCTCTTGAATCTCAATGAAATGTAAACCCTTGCATAAATTGACATTTTTCTGACACAGGCTTACATATGTGCCAGAGAAATGCTTTATTTCTTTGGTTTCTGTACTGGCTTCTTTGGTAGAAAATGCAATGTTTCTTTGGCTGTTTAGCTGTTTAATCAGTTTATCTTTGGATATTATACAAGACAATTTCATACTTGACAAAAATTATAATTGAAGTTAGAGTTAAAAAATCATAGGCTGCCATACATCCCTTTTCGGCTTTTGGCTTTCTTTTTTAAATTCTCGCAAGTCATAAGGGCAATCTGAAAAATAAGATGTTTTATGACGGGAAATTGTAGGAAGAATGTATCCAACAACTTATCCACCTCCCCCCAGTTAAGGTTGGTTGTATTCAAATATAAGCAGTTGTCATTTTTTTTCCAGCATTAAACAATAGGTGGCACTATATTTCATTTATCTGAACAGATTTGGCTTATTACAGAACATGTGGAGGAATTGTAACATTAACAATTTTTGCTCCTTGCTGTTTGTAACGTGCAGGTTAGGCCATTGAAATGCTTCCAAAATCTGGAGGCCTTGTTGAAGAGAGATCATTCAAATGGAAGTAGTCGTGGCGGTTCATCTCGCTCCACATCAAGCAGAATATGAAGGAGAACATTGGTCTTATCCTGTAACTAAAATATTGGTATAAAGATAAAAGATAGCAACCAAATTTGACTTCTTGAGTTGGAGCTTTGCAACGTTTTCTCGTGTGTATTCATTCACAGGTTCATGGTTGTTTTCGTCTTTCAAGATTCTTTATACTCGATGATTTATTTCCAATTACATTTATGTCTGGTGACAGAATTAGTATTTGTATGTAACATATACACGTATTCTAAGGAATTTGCTCCCTGTCATGTACATTATTATGTAACAAGACATTTTTGTTGGGTATATATCAGGCAATAGATTTTTAGCTGAAGAACTTCACCAATT
>Glyma15g09490.1 sequence type=CDS gene model=Glyma15g09490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCGAAAAACCCTGCGAGGTTTACGCTGGGGAAGCAGTCGTCGCTTGCCCCAGAACGCCATAACAAAGAAGCAGAGCTCCAAAAAGATGGGGAAGCTGTTGATCAGGGTGTGAGGTTGATGTATTCGGCATTCGAAGGCGATGTGGATGGAATTCGCGAGGCGTTGGAGTCTGGTGTGAGTGTGAATTACAAGGATATTGATAATCGCACTGCTCTTCATGTTGCGGCGTGTGAGGGCTTCACTGATGTTGTTGATTTATTGCTCCAAAAAGGTGCTGAAGTTGACCCCAAAGATCGATGGGGGAGCACGCCACTTGCAGATGCTATTTTTTATAAAAAGAATGACGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCCTTTGATGGCCCCTATGCATGTTAATCATGCGCGTGAAGTCCCAGAGTATGAAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACGAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTAATTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCATGAAAAGAAAAGGAGCTTTGAAACCATCAACAGCTGTGAGATTTGCACTTGACATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCGCCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCCTGCCGCTATGTGGCTCCTGAAGTTTTCAGACAAGAAGAATATGACACTAAAGTGGATGTATTTTCATTTGCACTAATTCTGCAAGAGATGATTGAAGGCTGCCCTCCTTTTTCTGCAAAGCAAGACGATGAAGTTCCCAAGGTATATGCTGCAAAAGAGCGTCCACCTTTCCAAGCACCAGCCAAGCGTTACTCCCATGGAATTCGAGAATTGATTGAAGAGTGCTGGAATGAGAATCCAGCAAAGCGGCCAACATTTAGGCAAATAATAACAAAGCTGGAGTCCATCTACAACACAATTGGTCACAAAAGACATTGGAAGGTTAGGCCATTGAAATGCTTCCAAAATCTGGAGGCCTTGTTGAAGAGAGATCATTCAAATGGAAGTAGTCGTGGCGGTTCATCTCGCTCCACATCAAGCAGAATATGA >Glyma15g09490.3 sequence type=CDS gene model=Glyma15g09490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCGAAAAACCCTGCGAGGTTTACGCTGGGGAAGCAGTCGTCGCTTGCCCCAGAACGCCATAACAAAGAAGCAGAGCTCCAAAAAGATGGGGAAGCTGTTGATCAGGGTGTGAGGTTGATGTATTCGGCATTCGAAGGCGATGTGGATGGAATTCGCGAGGCGTTGGAGTCTGGTGTGAGTGTGAATTACAAGGATATTGATAATCGCACTGCTCTTCATGTTGCGGCGTGTGAGGGCTTCACTGATGTTGTTGATTTATTGCTCCAAAAAGGTGCTGAAGTTGACCCCAAAGATCGATGGGGGAGCACGCCACTTGCAGATGCTATTTTTTATAAAAAGAATGACGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCCTTTGATGGCCCCTATGCATGTTAATCATGCGCGTGAAGTCCCAGAGTATGAAATCAATCCTAAAGAGCTTGATTTTACCAACAGTGTGGAGATAACGAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAAAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTAATTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCATGAAAAGAAAAGGAGCTTTGAAACCATCAACAGCTGTGAGATTTGCACTTGACATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCGCCCATTATTCACCGTGATCTCGAGCCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGATACTTCCTGTGGGTGCTGCTTTTCTTCAGAACTATCATTATGCACACTTGAAATACCTAAATATCTGAAATGCTGTATTTTCTTATTCGTTGGGCATAAGAGAATATTGTCATTATTGTGA
>Glyma15g09490.1 sequence type=predicted peptide gene model=Glyma15g09490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESKNPARFTLGKQSSLAPERHNKEAELQKDGEAVDQGVRLMYSAFEGDVDGIREALESGVSVNYKDIDNRTALHVAACEGFTDVVDLLLQKGAEVDPKDRWGSTPLADAIFYKKNDVIKLLEKHGAKPLMAPMHVNHAREVPEYEINPKELDFTNSVEITKGTFCSALWRGTKVAVKKLGEDVISDEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFMKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQDTSCRYVAPEVFRQEEYDTKVDVFSFALILQEMIEGCPPFSAKQDDEVPKVYAAKERPPFQAPAKRYSHGIRELIEECWNENPAKRPTFRQIITKLESIYNTIGHKRHWKVRPLKCFQNLEALLKRDHSNGSSRGGSSRSTSSRI* >Glyma15g09490.3 sequence type=predicted peptide gene model=Glyma15g09490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESKNPARFTLGKQSSLAPERHNKEAELQKDGEAVDQGVRLMYSAFEGDVDGIREALESGVSVNYKDIDNRTALHVAACEGFTDVVDLLLQKGAEVDPKDRWGSTPLADAIFYKKNDVIKLLEKHGAKPLMAPMHVNHAREVPEYEINPKELDFTNSVEITKGTFCSALWRGTKVAVKKLGEDVISDEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFMKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQDTSCGCCFSSELSLCTLEIPKYLKCCIFLFVGHKRILSLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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