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Report for Sequence Feature Glyma15g09460

Feature Type:gene_model
Chromosome:Gm15
Start:6765251
stop:6766624
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g09460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29680AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1264) | chr1:10377900-10378931 REVERSE LENGTH=237 SoyBaseE_val: 1.00E-72ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF06884PFAM Protein of unknown function (DUF1264) JGI ISS
UniRef100_B6UI56UniRef Annotation by Michelle Graham. Most informative UniRef hit: Secreted protein n=1 Tax=Zea mays RepID=B6UI56_MAIZE SoyBaseE_val: 2.00E-71ISS
UniRef100_I1MEX7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEX7_SOYBN SoyBaseE_val: 2.00E-109ISS

Expression Patterns of Glyma15g09460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g09460
ParalogEvidenceComments
Glyma13g29550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g09460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g088300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g09460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g09460
>Glyma15g09460.2   sequence type=CDS   gene model=Glyma15g09460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGCACGTGTGTTCCTTCGCCATCTATAGCCATGACATGTCTCGCCAGATTGAGACACACCACTACTGCTCCAGACTCAGCCAGAACTTCATCCAGTGTGCTGTCTATGATACCGATGAAATCAATGCTCGTCTCCTCGTTGTGTTGTGGGTGTGTGTGATAAGTGTGGAGTACATTGTTCCTGCTGATGTCTTTGAAACCTTTCCTCCCGAGGAGCAGAAGCTTTGGCATTCTCATGCTTATGAGATTAAATCAGGTCTGTTGGTGAATCTCAGAGTTCCTGAGGTTATTGCCATGCCAGACCTCGAAAACTTTGCCCAAACTTACGGCAAATTCTGGTGTACGTGGCAGGTTGACAGAGCCCTGATGATGTCTCCACAAGCAGTGAGTCCTGGTTTGGTGAGGGCAGACTTGGTGCTTGAGAGGGATGCCAAATACAATATTTCCTCAGATGGCCTGAAAAGCTCAAGGTTGGAGATTCCAGAGCCAGAGATGATCAACCCTTTGGCAGACTATTGGAAGCAACATGGCAAAGGATTTGGCATTAACATTGAGGAGACTGAGATG
Predicted protein sequences of Glyma15g09460
>Glyma15g09460.2   sequence type=predicted peptide   gene model=Glyma15g09460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QHVCSFAIYSHDMSRQIETHHYCSRLSQNFIQCAVYDTDEINARLLVVLWVCVISVEYIVPADVFETFPPEEQKLWHSHAYEIKSGLLVNLRVPEVIAMPDLENFAQTYGKFWCTWQVDRALMMSPQAVSPGLVRADLVLERDAKYNISSDGLKSSRLEIPEPEMINPLADYWKQHGKGFGINIEETEM






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