Report for Sequence Feature Glyma15g09210
Feature Type: gene_model
Chromosome: Gm15
Start: 6535317
stop: 6536945
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g09210
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G42760 AT
Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267
SoyBase E_val: 2.00E-33 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF07939 PFAM
Protein of unknown function (DUF1685)
JGI ISS
UniRef100_I1MEV4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEV4_SOYBN
SoyBase E_val: 3.00E-163 ISS
Expression Patterns of Glyma15g09210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g09210
Paralog Evidence Comments
Glyma13g29900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g09210 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g085500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g09210
Coding sequences of Glyma15g09210
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g09210.1 sequence type=CDS gene model=Glyma15g09210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGGATGCAGAAGAAGTCTTGAAGCTCTATGATTCATGCTGGTTTGGGCATCAAAATTTAAAGGAACACACAACAAGTTCACCAACACCAAGTCCTCATGAGAATTCTTCAGATCATCAAATAAGAGAAGAACCAATGCTTTTACGCATCCAAAGCAGTCACAGCAGGTCCATGAGCGACCAGTTGAGTTCCATGACATGTTTCAAGGATGATTCTCTCTCCCCAGACTCAGTTTTCTCACCAAAGCTTCAAACAATTCTCTCAGGAAAAGATGTCACAGACTCAGAAGCAGCACAGGTGCAGCATCAACTAGTATTGTTGCCTAAGAATAGGGAAAGGAGGAAGAAAAGGTCAAGCAAGAGTTTATCAGACCTTGAATTTGAGGAGCTAAAAGGGTTCATGGATTTGGGGTTTGTTTTCTCAGAGGAAGATAAGGACTCAAGTTTGGCTTCAATCATACCTGGCTTGCAAAGGTTAGGGAAGAGTGATGAGGAAGAAGAGGATTCTGAAGGATCCTCAGTCCAAAGACCTTACCTCTCTGAAGCATGGAAGATTCAAGAAAGGAGAAAGAAAGAGAACCCTCTCATGAATTGGAAGATTCCTGCTCTGAACAATGAAATTGACATAAAAGATAGTCTCAGGTGGTGGGCTCAAACCGTTGCTTCCACTGTTAGATGA
Predicted protein sequences of Glyma15g09210
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g09210.1 sequence type=predicted peptide gene model=Glyma15g09210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMDAEEVLKLYDSCWFGHQNLKEHTTSSPTPSPHENSSDHQIREEPMLLRIQSSHSRSMSDQLSSMTCFKDDSLSPDSVFSPKLQTILSGKDVTDSEAAQVQHQLVLLPKNRERRKKRSSKSLSDLEFEELKGFMDLGFVFSEEDKDSSLASIIPGLQRLGKSDEEEEDSEGSSVQRPYLSEAWKIQERRKKENPLMNWKIPALNNEIDIKDSLRWWAQTVASTVR*